PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08356.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 240aa    MW: 25197.4 Da    PI: 4.6034
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08356.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39961951100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+l++ C+++Cvla +fp ++  kf  vh++FG+sn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q
  Sme2.5_08356.1_g00003.1  96 SCAACKFLGKICTENCVLATCFPPDDLIKFTTVHRVFGTSNIIKLLQELPESQRADAVSSMVYEANARLRDPVYGCLGSICHLQKQ 181
                              6************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +  l+a+la++++e
  Sme2.5_08356.1_g00003.1 182 IGDLQAQLAKAQAE 195
                              **********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.42595196IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-3996193IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEYSLCSEMG IIATSSLSSS SSSSGSPSSS SSSSPSSNYP LSPPAEVTSS PPSSSAVSSS  60
SSSPNSPPTD LPTEATSLPS SSRAVLAPVT VVVIRSCAAC KFLGKICTEN CVLATCFPPD  120
DLIKFTTVHR VFGTSNIIKL LQELPESQRA DAVSSMVYEA NARLRDPVYG CLGSICHLQK  180
QIGDLQAQLA KAQAEIINME CQHANLMALI CMDMSQSPQP ISSPQQSLDS FANNSLSFME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-37872012116LOB family transfactor Ramosa2.1
5ly0_B2e-37872012116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366412.11e-85PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR07e-58LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0V0GZC17e-89A0A0V0GZC1_SOLCH; Putative LOB domain-containing protein 11-like (Fragment)
STRINGPGSC0003DMT4000652974e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-58LOB domain-containing protein 1