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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08231.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 507aa MW: 58223.1 Da PI: 10.2291 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.1 | 5.3e-20 | 170 | 219 | 4 | 54 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 ++Wt++LH++F+eave L G+ + P +ile+m+v+gLt+ +v+SHLQk R Sme2.5_08231.1_g00001.1 170 IEWTEDLHTKFMEAVELL-GEGRCYPMEILEVMNVPGLTRMQVASHLQKCR 219 79****************.9*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.235 | 1 | 89 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-5 | 11 | 111 | No hit | No description |
SuperFamily | SSF46689 | 1.7E-15 | 165 | 220 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 166 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-18 | 167 | 220 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MTVDTISTAM LTLSKGKQKI DMMILNVHST NLLSFDLLRQ AVALDIISLV VCDELDEIVA 60 KKVLDDGAYL YLKKPLNKEI VNYLWQFVLS EKIRREKARE RSEKNNHLTK KNVSDTEEQS 120 NTIHEAENDV ILNGKYKLRR NKGIQSMKEI NEGESQNNAT SKVVRQKNYI EWTEDLHTKF 180 MEAVELLGEG RCYPMEILEV MNVPGLTRMQ VASHLQKCRR NNWRSPKERK SNRHRSCQQS 240 SSVSHAPRSG FRKFGTMPRL QANVSNQRKS NRYRSCQQSS SVSHAPRSGF RKFGTMPRLQ 300 GNVPNQTQRG QGFPFPTLNT TYSFARGESS IQQLYCPQLQ VQPHRLNIGN QILTTQTNVG 360 GGLQHGPLFD LNVSPSATYS GSRIVLGTDI ENTTSVDNVI TYSSSAMKAD TYVGNVTING 420 SGATNASESN TYFNFNNMGY LFQNMGHSMV TTIKVLRWWW RTPNIPPTHC RWWWRGPIQR 480 WSHLWGRWRW HSSELHLLHI FNDWLLV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235792 | 5e-49 | AC235792.1 Solanum lycopersicum chromosome 3 clone C03HBa0029M12, complete sequence. | |||
GenBank | BT014322 | 5e-49 | BT014322.1 Lycopersicon esculentum clone 133578R, mRNA sequence. | |||
GenBank | HG975442 | 5e-49 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 5e-49 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165596.1 | 1e-155 | PREDICTED: putative two-component response regulator ARR13 | ||||
TrEMBL | M1CN23 | 1e-130 | M1CN23_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070984 | 1e-131 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 6e-21 | response regulator 2 |