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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08220.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35787.2 Da PI: 5.8816 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.6 | 9.3e-14 | 7 | 117 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevls 94 +++l+ yL + v+g ++++ + i+ vd+y +P++L ++++++ y F++ +k +a +g++ +r g+W + +++v++ Sme2.5_08220.1_g00001.1 7 EQQLL-GYLLRYVTGVPIQC-DRIRYVDLYGNkKPSELF-DTTTTNHYHYVFTRLKKVKAeNGNNFSRRFVGGTWTRKAATRPVYN 89 55666.8*************.88******97549****6.44455566688887666554279999999999************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++g k+ + f + ++ W m ey+l Sme2.5_08220.1_g00001.1 90 KERSEIGFKRAFRFD---E---NNLAWYMTEYHL 117 **************7...2...3579******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.187 | 1 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-6 | 7 | 117 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-15 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGMNINEQQL LGYLLRYVTG VPIQCDRIRY VDLYGNKKPS ELFDTTTTNH YHYVFTRLKK 60 VKAENGNNFS RRFVGGTWTR KAATRPVYNK ERSEIGFKRA FRFDENNLAW YMTEYHLSDR 120 ILEDLRLRGQ IPHEVFVVCR IRCTVITENF AVNSVPISSS QCQETVKSFA QENQDLRQSN 180 VISNGNVIRP VSLVLKESNV TQLQCSVPVA HQETPSVSYV AREEECSVPV VHQENPSVSL 240 PANESNVVAA KEEESSAHPD NDIASYHKKL DAYAASVLET MVPYIPEPPQ EDDADSIRLF 300 CEDFYIGYTN LWS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 7e-38 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064738.1 | 1e-120 | uncharacterized protein LOC107009957 | ||||
TrEMBL | M1C7F5 | 1e-114 | M1C7F5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061390 | 1e-114 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 6e-10 | NAC domain containing protein 2 |