PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08155.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29162.4 Da PI: 5.4565 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 45 | 97 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++F ++ ++ +++ + A++lgL+ rqV +WFqN+Ra++k Sme2.5_08155.1_g00006.1 45 TRRFSDEQIKSLETMFDMETKLEPRKKLQVARELGLQPRQVAIWFQNKRARWK 97 468*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2.1e-39 | 44 | 135 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 + rr+s+eq+k+LE++F++e+kLep++K ++areLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L+ke+++L Sme2.5_08155.1_g00006.1 44 NTRRFSDEQIKSLETMFDMETKLEPRKKLQVARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYESLKKEKQSL 129 569*********************************************************************************** PP HD-ZIP_I/II 88 reelke 93 +l++ Sme2.5_08155.1_g00006.1 130 LIQLQK 135 999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-18 | 21 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.568 | 39 | 99 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 42 | 103 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-18 | 45 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.1E-16 | 45 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.75E-14 | 46 | 100 | No hit | No description |
PRINTS | PR00031 | 4.4E-5 | 70 | 79 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 74 | 97 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.4E-5 | 79 | 95 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.3E-17 | 99 | 138 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MFDAGEFSPT SSAAALSAEC FSSSSCFSSL SSSKKKSKMM SSKNTRRFSD EQIKSLETMF 60 DMETKLEPRK KLQVARELGL QPRQVAIWFQ NKRARWKSKQ LERDYSILKS NYDNLASQYE 120 SLKKEKQSLL IQLQKLSDVI HKEGGKYCCK QEIDSTGFES DNRDDAKKKN VMDGRPSLSF 180 DLSSQHGANG VISDDDSSIK ADYLVLNDDA DHHLLKMVEA GDSSLTSPEN WGSLDENGLL 240 DQQPNTTSYD QWWDFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-137 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538251.1 | 1e-128 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Refseq | XP_016538252.1 | 1e-128 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 2e-66 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A1U8DTA9 | 1e-127 | A0A1U8DTA9_CAPAN; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A1U8DVR6 | 1e-127 | A0A1U8DVR6_CAPAN; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | PGSC0003DMT400000694 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-52 | homeobox 7 |
Publications ? help Back to Top | |||
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