PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08014.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43519.2 Da PI: 6.9833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.9 | 1.9e-10 | 76 | 129 | 74 | 127 |
NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek.tdWvmheyr 127 n + ++gyW+ g+d +++ +g+l+g +ktL + + +++k +k t+W mhey+ Sme2.5_08014.1_g00003.1 76 CNSSDSDGYWEPYGTDSLIHK-DGKLIGYRKTLNYIEVKHEKDRKlTEWPMHEYT 129 4445679***********999.99************8866655544********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.573 | 6 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-5 | 77 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-15 | 77 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MSQFHVPSPA STDPFSSGKL DCYLGLVVLA AVGFGTRIQR IFVLVMHDVS CKADPFMAKK 60 KMHQGDLVIH ARSIQCNSSD SDGYWEPYGT DSLIHKDGKL IGYRKTLNYI EVKHEKDRKL 120 TEWPMHEYTR DRSSDDKQWV LCKLFKSGDK FLEAENKVAT KFAGPSIGVS SMDHTNQGPE 180 KADDLTDDKR PSNGRSCDLH PLPETDQGTM KPHSSSKLLD QAITPPPASD KVFMISHLPN 240 EKFQPAHDQG TRVSPHLPQN DQRTVSRTST GPHKANNVVV TDKVPSNCLN FDLHPVAAQK 300 VPPELQYDQQ TMVPLSGIHN MNNDEIIVKP PMLNHHHDAL DLPSSDQVPK LPSVDGSPHG 360 SHENEAITWW MAVLYCKKAA TIRWTVSVLD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572865.1 | 1e-117 | PREDICTED: uncharacterized protein LOC107870754 isoform X1 | ||||
TrEMBL | A0A2G2WSX7 | 1e-120 | A0A2G2WSX7_CAPBA; Uncharacterized protein | ||||
STRING | XP_009772246.1 | 3e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15035 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 2e-11 | NAC domain containing protein 1 |