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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07976.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 435aa MW: 49033.2 Da PI: 8.334 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 21.6 | 4.9e-07 | 174 | 192 | 4 | 22 |
G2-like 4 lrWtpeLHerFveaveqLG 22 + Wt++LH++F+ea+eqLG Sme2.5_07976.1_g00003.1 174 IIWTNDLHAKFIEALEQLG 192 68****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-5 | 170 | 197 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MLMSAGRLCP RLGLRLVGVM QAEDRPGSLI LRLICDRDFG NFNFLALRCG WRVPGGAIIL 60 GWRYVVPGPL MLCLICVGDL KPSGIVYDLN FEIVCDEYNE LLAMNALKNG AHLCVKRPCG 120 EMIMEESRKV EKDVVSNENY KLKRKKGRKG GKEINEGEGQ SSVINKTVTH KNYIIWTNDL 180 HAKFIEALEQ LGEGSDMDLS CLMTYVEQLE GKSLEKEGVV RSKGLNLRVI GCNKAPRGDD 240 GMTHLRCPKC GRNHDGTYWR DISACFGCGE MGHKILDYPY AQNKGKGGDI DQRGAPRHNW 300 FYALQRKQRG DEMLNDITGC DPVWQEKGLN LRFVGPHRVL RSIAKVFYEL ELPMGTNRVH 360 LFIHVSMLRG YVGDPNAIEL FEVVGVVVNE LTYEEVPVEM LCKHVIRLRI IGVASIKVLW 420 GINKLKVLFV EPERA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1 | 2 | 7 |