 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_07848.1_g00002.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
HD-ZIP |
Protein Properties |
Length: 305aa MW: 34869.8 Da PI: 6.3755 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_07848.1_g00002.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 90 | 143 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
Sme2.5_07848.1_g00002.1 90 KKRRLTMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 143
45689************************************************9 PP
|
2 | HD-ZIP_I/II | 133.4 | 8.2e-43 | 89 | 180 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+yd+lk++n++L+++++e
Sme2.5_07848.1_g00002.1 89 EKKRRLTMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRHYDSLKADNDALKTQNKE 174
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelk 92
L++el+
Sme2.5_07848.1_g00002.1 175 LHSELQ 180
***997 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MAFLPSTPDN ISLNFQDNNH HLPSTHPKIF PSPPFPHQDH FNHGGTVPSM LMRRSMSFSG 60 VERCDNHQDL RADDNEMSDD DGSSQLLGEK KRRLTMEQVK ALERSFEVAN KLEPERKIQL 120 ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YEILKRHYDS LKADNDALKT QNKELHSELQ 180 LLSMKKRESS VGGTTPMMFN LNKENEGSWS NNGSDENNSI DVNLGTRTSS GDSPFYSKNV 240 FPPEPGPGPG PIPLTQFLQS SSTPDLTHCH KNIDPTVQDE GFCNMFNPVD DQTNFWPWPE 300 QQHFN
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 137 | 145 | RRARWKTKQ |