PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_07848.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 34869.8 Da PI: 6.3755

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_07848.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	90	143	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Sme2.5_07848.1_g00002.1 90 KKRRLTMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 143 45689************************************************9 PP
2	HD-ZIP_I/II	133.4	8.2e-43	89	180	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+yd+lk++n++L+++++e Sme2.5_07848.1_g00002.1 89 EKKRRLTMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRHYDSLKADNDALKTQNKE 174 69********************************************************************************** PP HD-ZIP_I/II 87 Lreelk 92 L++el+ Sme2.5_07848.1_g00002.1 175 LHSELQ 180 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.96E-19	87	147	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-18	88	149	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.844	89	145	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-16	90	143	IPR001356	Homeobox domain
CDD	cd00086	8.53E-17	90	146	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-19	91	152	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	116	125	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	125	141	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-15	145	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAFLPSTPDN ISLNFQDNNH HLPSTHPKIF PSPPFPHQDH FNHGGTVPSM LMRRSMSFSG 60 VERCDNHQDL RADDNEMSDD DGSSQLLGEK KRRLTMEQVK ALERSFEVAN KLEPERKIQL 120 ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YEILKRHYDS LKADNDALKT QNKELHSELQ 180 LLSMKKRESS VGGTTPMMFN LNKENEGSWS NNGSDENNSI DVNLGTRTSS GDSPFYSKNV 240 FPPEPGPGPG PIPLTQFLQS SSTPDLTHCH KNIDPTVQDE GFCNMFNPVD DQTNFWPWPE 300 QQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232228.2	1e-180	homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G2XIA5	0.0	A0A2G2XIA5_CAPBA; Uncharacterized protein
STRING	Solyc02g087840.2.1	1e-180	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	2e-69	homeobox 3