PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07355.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 279aa    MW: 30592.1 Da    PI: 8.4613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07355.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-082038725
                             SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  7 rffartGtCkyGdrCkFaH 25
                             ++++rtG Ck+G++Ck++H
  Sme2.5_07355.1_g00002.1 20 QYYMRTGMCKFGASCKYHH 38
                             59***************** PP
2zf-CCCH25.72e-086286327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C++ ++tG+Ck+G +CkF+H++
  Sme2.5_07355.1_g00002.1 62 EKDCSHNMKTGQCKFGMTCKFHHPQ 86
                             5689999****************97 PP
3zf-CCCH19.81.5e-06228253126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++C++++++G  k+G++Ck++H+
  Sme2.5_07355.1_g00002.1 228 PGQPECHYYMKYGDGKFGSSCKCHHP 253
                              5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.651840IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.5162041IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-52038IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8595987IPR000571Zinc finger, CCCH-type
SMARTSM003560.00395986IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-56087IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-66286IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.779227255IPR000571Zinc finger, CCCH-type
SMARTSM003561.8227254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNKTVMFTVI MLVVSDYDLQ YYMRTGMCKF GASCKYHHQR QGGESPSLVM PSIHGYPLRP  60
NEKDCSHNMK TGQCKFGMTC KFHHPQRADA QVPASAAAPF PLPEAVLPPT TYPAVQSPSV  120
DSAEQYGMIA GNWSILRPTL LPSSYFPGTY GPMIFPSGMV PALDWTPYPD SASPVPSQTT  180
QSTGLNPVYR RTQLSASAPA YTGPHMSIIA SVGVSSSTQN ESAFPQRPGQ PECHYYMKYG  240
DGKFGSSCKC HHPAEWSAQT RILSLVLWVI LLTCKQLAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267357.11e-118PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A314KY391e-117A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009802825.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.14e-63C3H family protein