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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_07339.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 341aa MW: 38360.1 Da PI: 7.4648 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_07339.1_g00001.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 85.8 | 3.8e-27 | 135 | 195 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK++ g+++pr+YYrCt++ gC ++k+v++s+ + +++e+tY+g+H ++
Sme2.5_07339.1_g00001.1 135 EDGYSWRKYGQKDILGANHPRAYYRCTHRntqGCLATKQVQKSDGNSTMFEVTYKGRHSCK 195
7***************************98889*************************996 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MEKVRDLDKK KLMNELTQGK EFVKQLKRQI GPLASPQECD LLIGKILCTL EKSLSILNLK 60 ALLLEGGINN PNNSTSSSSS ISFPGNNSNN SPKREVLDSS RDQLSKSMVS KKRKKSQQWT 120 NQTSIFVNGV EGPQEDGYSW RKYGQKDILG ANHPRAYYRC THRNTQGCLA TKQVQKSDGN 180 STMFEVTYKG RHSCKAAQSE IFSLGNQKRH KHKTKQEQNM LIFNSEPNHK VENFNITTKE 240 EAFTPFPFSP TPLQLEETKF FSDSIAPFSS PIAPELSPYL SMLTSQNEEF GMMLQSSDSD 300 LTELISTPTS ISNSSFGGDC NLSEDFEPNL TFDIEEFLQL I
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU454585 | 0.0 | GU454585.1 Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds. |