 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_07263.1_g00001.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 201aa MW: 23518.6 Da PI: 7.5062 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_07263.1_g00001.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62 | 9.2e-20 | 51 | 103 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k
Sme2.5_07263.1_g00001.1 51 KRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 103
45899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 119.4 | 2e-38 | 50 | 140 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ +++rLe+ev +L
Sme2.5_07263.1_g00001.1 50 RKRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHETNIVDKCRLENEVLKL 135
8************************************************************************************* PP
HD-ZIP_I/II 88 reelk 92
+e++
Sme2.5_07263.1_g00001.1 136 KEQMC 140
*9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MNSDDQMLLI SQYYSGIYPQ QLSQQGEGKA RRRRKKNKGE EGVMMNMMMR KRKLSEEQVN 60
LLEQSFGHEH KLESERKDKL ASELGLDPRQ VAVWFQNRRA RWKSKKLEEE YSKLKSEHET 120
NIVDKCRLEN EVLKLKEQMC EAEKEIKRLL LERSDGVSSS SPTTSSLSME AVMDRPFLGE 180
FGFDDTTFYG PAQGWEWANN L
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 33 | 52 | RKKNKGEEGVMMNMMMRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 1e-102 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
