PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07226.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 300aa    MW: 33583.7 Da    PI: 7.8538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07226.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.99.3e-15219244126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +ktelC+ ++ tG C+yGd+C+FaHg
  Sme2.5_07226.1_g00004.1 219 FKTELCNKWQDTGACPYGDNCQFAHG 244
                              79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-19213251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-11215250IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-9218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.68218246IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-12219244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-8252284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7253286IPR000571Zinc finger, CCCH-type
SMARTSM003560.0053256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361256284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQREISTAGR GSAFSYDNGL PSPSVLSQPA FDLTSLYSSM LFPPTGQLLD DSQPSTETTV  60
TPVLTPRFRL NHSSQLLIDQ HYQQDLMDRH NRVLSQLLET EKKTLALRQE NINLKMANFN  120
LNNRLSLMLK PSSDYGPSSG LGLDNGLQSM HVGVGHEEET SSDGHSCGYL NKVHAAGGSR  180
PQNRTKSSSV NTAQRVYVKG GSKKEEPPIE LDVYNQGMFK TELCNKWQDT GACPYGDNCQ  240
FAHGIEELRP VLRHPRYNAE VCRMVLNGDP CPYGHRCHFR HTLTDQEKLM RSLNSKMRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-20219281466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-162HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344185.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
TrEMBLM1D0A80.0M1D0A8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000785220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-52C3H family protein