PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07193.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 221aa MW: 25425.2 Da PI: 8.346 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.7e-10 | 117 | 169 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++ rr+ +NRe+ArrsR RK++ +e+L++ + L+ N++L ++l ++ +++ Sme2.5_07193.1_g00003.1 117 RKRRRMVSNRESARRSRMRKQKHLENLRNLANRLKVGNRELTNRLRLISHQSQ 169 5779999***********************************99998887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.4E-9 | 113 | 177 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.749 | 115 | 167 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-7 | 117 | 167 | No hit | No description |
Pfam | PF00170 | 1.1E-7 | 117 | 169 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.43E-9 | 117 | 167 | No hit | No description |
CDD | cd14702 | 6.16E-17 | 118 | 167 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 120 | 135 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLSTFPATTL SADGLFPNSF PAFDGGFTPW ECIEPAFLFP QEVEEEEPVV SPKDSPPPEP 60 VILNSDSGSD DSKPNTVHSS SGSDDPNRNN DNNNKSNRCP DEKKRQRTTS NRDIDERKRR 120 RMVSNRESAR RSRMRKQKHL ENLRNLANRL KVGNRELTNR LRLISHQSQV VSCENDRLRT 180 ESAILRQTLE DIRQILIARQ IEQQMNSYTA WACNNIEQRP H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 120 | KKRQRTTSNRDIDERKRRR |
2 | 116 | 120 | RKRRR |
3 | 116 | 137 | RKRRRMVSNRESARRSRMRKQK |
4 | 129 | 136 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560923.1 | 1e-119 | PREDICTED: light-inducible protein CPRF2-like | ||||
TrEMBL | A0A2G2XH87 | 1e-119 | A0A2G2XH87_CAPBA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055214 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22850.2 | 6e-30 | basic leucine-zipper 6 |