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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07193.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRF | ||||||||
Protein Properties | Length: 570aa MW: 61315 Da PI: 8.2365 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76 | 4e-24 | 197 | 241 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e+ Sme2.5_07193.1_g00001.1 197 DPEPGRCRRTDGKKWRCSREAVTDQKYCERHINRGRHRSRKHVEA 241 79****************************************996 PP | |||||||
2 | QLQ | 61.5 | 2.3e-21 | 130 | 166 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an PvPp+Ll +i+k Sme2.5_07193.1_g00001.1 130 GPFTPSQWMELEHQALIYKHFVANIPVPPQLLIPIKK 166 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.0E-13 | 130 | 166 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.6E-15 | 131 | 164 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.901 | 131 | 166 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.819 | 197 | 241 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.1E-20 | 198 | 240 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MEFGGLMAME AIASSAQQSQ TTNGSERSGP CDNNILRPFK VPKPAHAFSK QQNPPTNLFM 60 RSDSSNEGST HSTMLSFSSN KSDEIPFLST NNVSAFPLFD SGSYNNRAAS AYASGGSNES 120 RPGSFARFRG PFTPSQWMEL EHQALIYKHF VANIPVPPQL LIPIKKSLNP YSFSGLSAAP 180 SGWGWGTFHL GFAGNTDPEP GRCRRTDGKK WRCSREAVTD QKYCERHINR GRHRSRKHVE 240 AQKGHAVSGS TTSKLQSVTP SSSAMVILGS GASNSVGAVQ HQFNSLQPSA ANPSSEQLVN 300 RMEGHKGVSV ISPTICVMPK DSTVSVQKQQ NGFELSSQMD FGRVSSDSLL NPSQTNSFVN 360 PKNPIAFLDF HDQERSEQRP VHHFIDGWTQ EQSPGASASW PDQLNSRSTQ LSMSIPMAAS 420 DFSPSSSSPQ QVKLTLSPLR LSRDFDCIQM GLGMTSSYGD RTQKTTDWVP ASWGSSLGGP 480 LGEVLNSTAG NAGDDKSVSA LNVGTEVWDN SPSFESSPTD VLQKSTFVSL SNSSSGSSPR 540 GDSKKVHKGV GMCDEVVGST LASSLCIPLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363835.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | M1BXF0 | 0.0 | M1BXF0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055151 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 4e-94 | growth-regulating factor 1 |