PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07064.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 845aa MW: 95686.8 Da PI: 9.0099 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.1 | 7.9e-11 | 12 | 58 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrF Pt e + +yL++kv+g++++l ++i+e+d+yk++P Lp Sme2.5_07064.1_g00002.1 12 LPPGFRFYPTHEKRLFQYLCRKVAGDDFSL-QIIAEIDLYKFDPCVLP 58 79***************************9.89************998 PP | |||||||
2 | NAM | 44.3 | 5.5e-14 | 59 | 101 | 85 | 128 |
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tg+dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mh yrl Sme2.5_07064.1_g00002.1 59 TTGTDKVITS-QGRKVGIKKALVFYIGKAPKGTKTNWIMHKYRL 101 5899999999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.623 | 1 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-33 | 8 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-9 | 13 | 101 | IPR003441 | NAC domain |
SuperFamily | SSF56672 | 7.03E-59 | 543 | 784 | No hit | No description |
Gene3D | G3DSA:3.10.10.10 | 2.3E-24 | 549 | 691 | No hit | No description |
CDD | cd01647 | 1.30E-42 | 583 | 702 | No hit | No description |
CDD | cd09274 | 6.27E-42 | 697 | 793 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MHKPDPLAKL SLPPGFRFYP THEKRLFQYL CRKVAGDDFS LQIIAEIDLY KFDPCVLPTT 60 GTDKVITSQG RKVGIKKALV FYIGKAPKGT KTNWIMHKYR LSEPSTKSGS SSRLDDWVLC 120 WIYKKNSNMQ KTCSSGLQSK EISHGSSSSL PSQFNGMLES LAIIEDQYFS LPTRSFQQDD 180 NKLNIQQQGC GNFDWTTLAG FNSFPKLTAR NQAPAHAYGS TDKLVFAPVR YWTDVAMTSL 240 RCITTTRKSY GSTDKLVFAP KIPSKRIVTQ RDDLAPAAEN AQLEVLLVAS RGNSQGPQAP 300 SSISPESSAT TRPRDFLRMN MLVYTRSKVE EDLPNFIDEM YKVLKGMHAN EIERVELASY 360 QLKDIVNVWY NQWEDSRDRL GTSNLSTRRG DEVKGTAEHS PPQHPQLAII RGVLLQDQED 420 TPDVVTSMFC VFTFDCYVLF DPGATLYSVT PYVAGKFGIL LECFLEPFVI STLTEWKGSS 480 VAPKGKFISY LRAKKFISKG CIYHLVRVKS DDAEFSTLES VPIVNEFPEV FLNDLPGVPP 540 DRKIEFGIDV LPKTQPISIP PYRMASAKLE ELNEQLKDLL EKGFIRPNVS SFGAPVLFMH 600 KKDGPIRMCI NYWQLLKVTI KNKYPLLSLY DLFDQLQGAT CFSKIDLRSS YHQLKVRESD 660 IPKTAFRTRY GHFEFLVMSF GLTNAPVSFM DLTNRIRKVI AYASRQLKIH KKNYLTHDLE 720 LMTVVFALKT WCHYLYGVHV DVFTNHKSLQ YIFSQKELNL RQKRWLDLLN DYDMSILYHP 780 GKANIVVDAL SRLSMGSTTD VEEGKRELAK EVHRLALLGV QLEENNEGGV NVQNGSASSL 840 VSGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-55 | 1 | 131 | 9 | 174 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 8e-65 | NAC family protein |