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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07028.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 33115.4 Da PI: 4.2856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg+fgt eeAa+a++ a+ +++g Sme2.5_07028.1_g00002.1 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFGTQEEAAAAYDMAAIEYRG 76 89****99**********99966...3.6*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-13 | 25 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-17 | 25 | 86 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-18 | 25 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.321 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-26 | 26 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-18 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-5 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-5 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MQRLSKEEYL ASLRRMSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTFGTQ 60 EEAAAAYDMA AIEYRGPNAV TNFDISRYAD HFKKLRQPDQ LPEQENTESS AEVQSNEMIE 120 PYLPIQQEEN QLDFQIAELA AEPMVVPKLE FTPALDSYEV TQPKLQKLES AADTTKAKDH 180 EGIEDYPWLN MYLDNSCGSL PVSDFSPDKP SDLMDLLDDT SFDNSIDFNF YEQSSENELN 240 LKEFSDSMII DEIEATNEEG SKNPSTSPTS SSSVSRTTSI CSGMKDDGGL ASSKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347702.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor WRI1-like | ||||
TrEMBL | M1CML9 | 1e-156 | M1CML9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070735 | 1e-156 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9134 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 2e-48 | ERF family protein |