PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_06967.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 920aa MW: 100383 Da PI: 9.8464 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.8 | 1.2e-12 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie+ + rq fsk + KA L vLCd++va+++fs+tg++ yss Sme2.5_06967.1_g00001.1 10 KIEDPISRQQFFSKQIDSMVQKADDLAVLCDTDVALLMFSPTGQVTNYSS 59 79**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.451 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-17 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-14 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR01217 | 2.7E-10 | 303 | 319 | No hit | No description |
PRINTS | PR01217 | 2.7E-10 | 336 | 348 | No hit | No description |
PRINTS | PR01217 | 2.7E-10 | 359 | 380 | No hit | No description |
PRINTS | PR01217 | 2.7E-10 | 380 | 396 | No hit | No description |
PRINTS | PR01217 | 2.7E-10 | 513 | 538 | No hit | No description |
SMART | SM00498 | 1.0E-5 | 590 | 900 | IPR015425 | Formin, FH2 domain |
PROSITE profile | PS51444 | 14.703 | 590 | 920 | IPR015425 | Formin, FH2 domain |
Pfam | PF02181 | 1.4E-46 | 593 | 774 | IPR015425 | Formin, FH2 domain |
SuperFamily | SSF101447 | 7.59E-25 | 661 | 773 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 920 aa Download sequence Send to blast |
MGRKKLVVEK IEDPISRQQF FSKQIDSMVQ KADDLAVLCD TDVALLMFSP TGQVTNYSSR 60 GSVEDTMLHI MNHPRELTRG CYIPQVENIS SVQEADACVQ FLESSVKQEK FFGGGGFLQS 120 NENVGVSSVN TGDATAAARD SEGRRKFTGS NLDIAGLWHV PVIDEDTAEQ AWIHCREELE 180 EGTEATKFLE YYIQQTATGS YSYLKQDIAL LRKRTLQKAI KDLSPQKKQI LLQCLRRKNV 240 PVHVSDRDDA SSTWFSKYEE LFSQLSSVPR RYLRKRKNLF LPKKRPLRNR KNPFLQKKHA 300 PVPSIAPSPG PATVPSPVPS PGRAAVPTLA PSLGHATVPS PVPSPGPAAV PTLAPSPGPA 360 IVSPIYAPVP SIEVPTSSYP TVQPPSPVIK PPAKPPNLQT HTNSSNHLPV NPPDKPQNGP 420 NSQGDNQQHR KYLIAAVAGC SVAGIAFLAL LILCVKNKKK EIPSNDEQRD GKPPLKLNAG 480 SSLNIKSATA VDYADPDNSF GAEAKLSKPG MNENAHAPVP LPPGKSAPPP PHPPPGPPPP 540 PPPKPPAPSP PPPPKVPPPT PPKPGNLPKP LPPGAHHRGR SSEAGGSDSL GEYDAPKTKL 600 KPFFWDKVLA NPDHSMVWHE IKAGSFQFNE EMMDSLFGYI PGEQGKDDRR KASSSFDQTS 660 QYVQIIDPKK SQNLAILLKA LNVTTEEVYD ALEEGNELPP ELIRTLLKMA PTTDEELKLR 720 LFAGDISQLG PAERFLRSIV AIPFAFKRMD ALLLMCSLQE EVSTIKESFA TLEKKEWRGV 780 PPRSPSRYVV LFTDCEGARG GTLKQKYWQP SKGLLPRARS RPVVRFTSRE GPLGLAHLKK 840 TKASHKMAKR RLHGLWSEVH CARPPLVVVC ATGSGGVRGD ALGREQGRPC EGHPSRDIPR 900 QMVCTTAHGV LRGGYTFKAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN836738 | 0.0 | JN836738.1 Solanum lycopersicum formin (Solyc07g05270) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289832.2 | 0.0 | formin I2I | ||||
TrEMBL | G8IRK0 | 0.0 | G8IRK0_SOLLC; Formin-like protein | ||||
STRING | Solyc07g052730.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-15 | AGAMOUS-like 104 |