PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06967.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 920aa    MW: 100383 Da    PI: 9.8464
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06967.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-121059251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +ie+ + rq  fsk    +  KA  L vLCd++va+++fs+tg++  yss
  Sme2.5_06967.1_g00001.1 10 KIEDPISRQQFFSKQIDSMVQKADDLAVLCDTDVALLMFSPTGQVTNYSS 59
                             79**********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.451161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-17273IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-11323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-113859IPR002100Transcription factor, MADS-box
PRINTSPR012172.7E-10303319No hitNo description
PRINTSPR012172.7E-10336348No hitNo description
PRINTSPR012172.7E-10359380No hitNo description
PRINTSPR012172.7E-10380396No hitNo description
PRINTSPR012172.7E-10513538No hitNo description
SMARTSM004981.0E-5590900IPR015425Formin, FH2 domain
PROSITE profilePS5144414.703590920IPR015425Formin, FH2 domain
PfamPF021811.4E-46593774IPR015425Formin, FH2 domain
SuperFamilySSF1014477.59E-25661773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MGRKKLVVEK IEDPISRQQF FSKQIDSMVQ KADDLAVLCD TDVALLMFSP TGQVTNYSSR  60
GSVEDTMLHI MNHPRELTRG CYIPQVENIS SVQEADACVQ FLESSVKQEK FFGGGGFLQS  120
NENVGVSSVN TGDATAAARD SEGRRKFTGS NLDIAGLWHV PVIDEDTAEQ AWIHCREELE  180
EGTEATKFLE YYIQQTATGS YSYLKQDIAL LRKRTLQKAI KDLSPQKKQI LLQCLRRKNV  240
PVHVSDRDDA SSTWFSKYEE LFSQLSSVPR RYLRKRKNLF LPKKRPLRNR KNPFLQKKHA  300
PVPSIAPSPG PATVPSPVPS PGRAAVPTLA PSLGHATVPS PVPSPGPAAV PTLAPSPGPA  360
IVSPIYAPVP SIEVPTSSYP TVQPPSPVIK PPAKPPNLQT HTNSSNHLPV NPPDKPQNGP  420
NSQGDNQQHR KYLIAAVAGC SVAGIAFLAL LILCVKNKKK EIPSNDEQRD GKPPLKLNAG  480
SSLNIKSATA VDYADPDNSF GAEAKLSKPG MNENAHAPVP LPPGKSAPPP PHPPPGPPPP  540
PPPKPPAPSP PPPPKVPPPT PPKPGNLPKP LPPGAHHRGR SSEAGGSDSL GEYDAPKTKL  600
KPFFWDKVLA NPDHSMVWHE IKAGSFQFNE EMMDSLFGYI PGEQGKDDRR KASSSFDQTS  660
QYVQIIDPKK SQNLAILLKA LNVTTEEVYD ALEEGNELPP ELIRTLLKMA PTTDEELKLR  720
LFAGDISQLG PAERFLRSIV AIPFAFKRMD ALLLMCSLQE EVSTIKESFA TLEKKEWRGV  780
PPRSPSRYVV LFTDCEGARG GTLKQKYWQP SKGLLPRARS RPVVRFTSRE GPLGLAHLKK  840
TKASHKMAKR RLHGLWSEVH CARPPLVVVC ATGSGGVRGD ALGREQGRPC EGHPSRDIPR  900
QMVCTTAHGV LRGGYTFKAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8367380.0JN836738.1 Solanum lycopersicum formin (Solyc07g05270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289832.20.0formin I2I
TrEMBLG8IRK00.0G8IRK0_SOLLC; Formin-like protein
STRINGSolyc07g052730.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-15AGAMOUS-like 104