PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06927.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 190aa MW: 22059.5 Da PI: 4.8005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06927.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116	3.7e-36	3	123	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ ae ++wyf+s+r + +r+t++gyWk+ Sme2.5_06927.1_g00006.1 3 LPPGFRFYPTDEELVVHFLHRKATLLPCHP-DVIPDLNLYPYDPWHLDGKAMAEGNKWYFYSRRTH--------SRITENGYWKSL 79 79***********************999.99**********977778899**9865........699***** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g +++++s+ ++++ g+kk +fy g+ p+g+kt+Wvm+e++l Sme2.5_06927.1_g00006.1 80 GVEEPIFSTdnNNNNLGMKKYYAFYIGEPPEGVKTNWVMQEFSL 123 ***99777778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-46	1	156	IPR003441	NAC domain
PROSITE profile	PS51005	44.713	3	157	IPR003441	NAC domain
Pfam	PF02365	1.8E-21	4	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MNLPPGFRFY PTDEELVVHF LHRKATLLPC HPDVIPDLNL YPYDPWHLDG KAMAEGNKWY 60 FYSRRTHSRI TENGYWKSLG VEEPIFSTDN NNNNLGMKKY YAFYIGEPPE GVKTNWVMQE 120 FSLNSDSSSG TSRSSSKRRT RSKIDYSGWV ICRVYERNFD NDDDDGGPEL SCLDEVFLSL 180 DDLDEISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-36	1	158	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-36	1	158	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-36	1	158	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-36	1	158	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	8e-36	1	158	18	169	NAC domain-containing protein 19
3swm_B	8e-36	1	158	18	169	NAC domain-containing protein 19
3swm_C	8e-36	1	158	18	169	NAC domain-containing protein 19
3swm_D	8e-36	1	158	18	169	NAC domain-containing protein 19
3swp_A	8e-36	1	158	18	169	NAC domain-containing protein 19
3swp_B	8e-36	1	158	18	169	NAC domain-containing protein 19
3swp_C	8e-36	1	158	18	169	NAC domain-containing protein 19
3swp_D	8e-36	1	158	18	169	NAC domain-containing protein 19
4dul_A	8e-36	1	158	15	166	NAC domain-containing protein 19
4dul_B	8e-36	1	158	15	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	3e-82	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083878.1	1e-104	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-81	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0V0HHT6	1e-110	A0A0V0HHT6_SOLCH; Putative NAC transcription factor 25-like
STRING	PGSC0003DMT400076481	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-81	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]