PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_06479.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 315aa MW: 35091.1 Da PI: 6.6046

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06479.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	176	223	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sme2.5_06479.1_g00003.1 176 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 223 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.13E-10	170	227	No hit	No description
SuperFamily	SSF47459	3.01E-17	170	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	172	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-7	176	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MASFSSHQLQ HNNPFLVDSV FLPSSMSGFF EEPNNSCIVQ NSFPQFYQQE FPVVHENSFC 60 FDQTTNVSHD EPNSVHTNKS SSSITLDMDS SSVTDKIESG SNNNKANVTS MEKKRKSREG 120 SSSMTSAHSK NVKQSDNGKK KKTNSKLVAK DEKKANEEAP TGYIHVRARR GQATDSHSLA 180 ERVRREKISE RMKILQSLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLTSVNPMY 240 YDFGMDLDAL MVKPDDQSLS GLETQMLNIQ QGSTTTTSQT AEVIANTNSG YPFLDNSTSL 300 MFQQAHFPNS IPQTL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ823169	0.0	JQ823169.1 Solanum lycopersicum basic helix-loop-helix (bHLH1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363974.1	0.0	PREDICTED: transcription factor bHLH137-like
TrEMBL	M1BRC8	0.0	M1BRC8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400051137	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4116	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-57	bHLH family protein