PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06478.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family YABBY
Protein Properties Length: 195aa    MW: 21543.2 Da    PI: 7.1316
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06478.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY192.51.9e-59201726159
                    YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvek 88 
                               seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhC++ll   l  +++     +h+++s+  +   llee  +++ n+ +n+++
  Sme2.5_06478.1_g00005.1  20 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCSNLLPGWLLPSTNHHHQLHHFGHSYFSPshnLLEEISNATPNFLMNQSN 105
                              689***************************************99999999999999999998877222444444444444444433 PP

                    YABBY  89 eesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                              +++           +   +++pr pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn
  Sme2.5_06478.1_g00005.1 106 STHDFVLP-----ARPGFDDLPRSPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 172
                              33333322.....4556788999999789******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-5620172IPR006780YABBY protein
SuperFamilySSF470952.75E-6124170IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSSSNSSSLD HLAPPPPPPP SEQLCYVHCN VCDTVLAVSV PCTSLFKTVT VRCGHCSNLL  60
PGWLLPSTNH HHQLHHFGHS YFSPSHNLLE EISNATPNFL MNQSNSTHDF VLPARPGFDD  120
LPRSPPVINR PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNDGEDVLMK  180
DGLFNTSANV SVSPY
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677590.0KJ667759.1 Solanum melongena YAB1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355492.11e-117PREDICTED: protein YABBY 4
SwissprotA2X7Q34e-58YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6684e-58YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A068FRT51e-118A0A068FRT5_9SOLN; YAB1 protein
STRINGPGSC0003DMT4000120831e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-56YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]