PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06397.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 140aa    MW: 14928.1 Da    PI: 10.072
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06397.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-193569135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C+ Cg+tkTplWR gp g+k+LCnaCG+++rkk++
  Sme2.5_06397.1_g00001.1 35 CVDCGATKTPLWRGGPAGPKSLCNACGIRNRKKRR 69
                             ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-152979IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.3342965IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-133371No hitNo description
Gene3DG3DSA:3.30.50.103.1E-153469IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-123469No hitNo description
PfamPF003203.7E-173569IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403560IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEMDLSDKGS GSEEVISRAA ATPERISSEI QVKTCVDCGA TKTPLWRGGP AGPKSLCNAC  60
GIRNRKKRRA LLGLKKEDKK TKKSSGHKKP MSPSCTSSSG DSTSGSSNVD KKNPIQWTKL  120
GEVEQAAFML MSLSCSSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7181455e-37AJ718145.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT31-3-470, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177663.13e-43PREDICTED: GATA transcription factor 16-like
RefseqXP_028068252.12e-43GATA transcription factor 15-like
SwissprotQ9FJ106e-30GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2G3AJ279e-45A0A2G3AJ27_CAPAN; GATA transcription factor 23
STRINGXP_009795635.18e-41(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-21GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]