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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_06345.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NAC |
| Protein Properties |
Length: 411aa MW: 46845.9 Da PI: 7.1835 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_06345.1_g00005.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.7 | 5.8e-50 | 35 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg
Sme2.5_06345.1_g00005.1 35 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATG 119
79***************************.89***************8778899******************************** PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d+ + +++++ +glkktLvfy+g+apkg +++W+m+eyrl
Sme2.5_06345.1_g00005.1 120 ADRMIRTENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 160
***************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MSQSQQQQED DNIIINNNDN NAIKGDDDHE HDMVMPGFRF HPTEEELVEF YLRRKVEGKR 60
FNVELITFLD LYRYDPWELP ALAAIGEKEW YFYVPRDRKY RNGDRPNRVT TSGYWKATGA 120
DRMIRTENSR SIGLKKTLVF YSGKAPKGIR SSWIMNEYRL PHHETERLQK AEISLCRVYK 180
RAGVEDHPSL PRSLLTTRAS SSSPSRGTTS IKKQQVAQQD SSLISPLYGG QSSQQQMEEK 240
LSTETSASST STDHHHHHQH HHHHVATSLG LNSLSNSYTN ISLDPIGGNA VTSSLNLTTS 300
NLTPFTSLVA TTNNTDDLHR LINIDQVVAF HNNQHHFHNN PINHHPPVVV SQQFPPLLLQ 360
QPQLAPPQQS LLLQGSLQSS AFSDRLWEWN SINQTDASCK DDHYQANNPF K
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 4e-56 | 36 | 181 | 22 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 3e-56 | 36 | 181 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 3e-56 | 36 | 181 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC238508 | 1e-128 | AC238508.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-43d23 map 1, complete sequence. |
