PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06310.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 586aa MW: 66701.7 Da PI: 8.3141

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06310.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.2	1.9e-29	454	514	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rsa+d+++++ tYegeHnh+k Sme2.5_06310.1_g00004.1 454 VKDGYEWRKYGQKVTRDNPYPRAYFKCSFApTCPVKKKVQRSADDKSIIVATYEGEHNHSK 514 58*************************99**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53756	7.63E-66	5	357	No hit	No description
Gene3D	G3DSA:2.20.25.80	2.7E-28	446	514	IPR003657	WRKY domain
PROSITE profile	PS50811	25.27	449	515	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-24	450	513	IPR003657	WRKY domain
SMART	SM00774	2.3E-33	454	514	IPR003657	WRKY domain
Pfam	PF03106	1.0E-23	455	512	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MILSVDMMKS FFNATQMLES QVEELLQELK PNCLISDMCF PWTTNVAKRI NIPRIVFHGM 60 GSFSLLCLHS LRDGKLLESI TCDTEYFSVP GLPDKVEVTK AQLKALVDPC NAEWREFGDQ 120 MKEAEDKAYG IVVNSFEELE PQYVQALKKA KGKKVWTVGP VSLCNKDTQD KVERGNTASI 180 DEHYCLKWLD SRKPDSVLFV CLGSLSRLPT SQMIELALGL ESSKRPFLWV VRNISDEFAK 240 WLNEENFNER VEKQGILIQG ISVGVPMITW PLFAEQFCNE KLIINVLNTG VKGGMENPVV 300 FLDEEKVGTK VKKDKIKMVI ERVMGEEEEA QMRRNRAKMF GEMAIMAMEE GDHVAQEVKR 360 LSDENKLREM LSVMCDNYNS LRKQYMSNCS ASGMSRKRKA ENSRLFDARF HGINSELSCN 420 KSRLVHHDHI QLKNINSTHY IRTTQASHDT SLIVKDGYEW RKYGQKVTRD NPYPRAYFKC 480 SFAPTCPVKK KVQRSADDKS IIVATYEGEH NHSKVLLETG EGSSDQLVNG NRTISINTAA 540 IRRSHNKQPE FHKLLIDQMA SSLIKDPKFD AALAAALSRK TILPHK

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MILSVDMMKS FFNATQMLES QVEELLQELK PNCLISDMCF PWTTNVAKRI NIPRIVFHGM  60
GSFSLLCLHS LRDGKLLESI TCDTEYFSVP GLPDKVEVTK AQLKALVDPC NAEWREFGDQ  120
MKEAEDKAYG IVVNSFEELE PQYVQALKKA KGKKVWTVGP VSLCNKDTQD KVERGNTASI  180
DEHYCLKWLD SRKPDSVLFV CLGSLSRLPT SQMIELALGL ESSKRPFLWV VRNISDEFAK  240
WLNEENFNER VEKQGILIQG ISVGVPMITW PLFAEQFCNE KLIINVLNTG VKGGMENPVV  300
FLDEEKVGTK VKKDKIKMVI ERVMGEEEEA QMRRNRAKMF GEMAIMAMEE GDHVAQEVKR  360
LSDENKLREM LSVMCDNYNS LRKQYMSNCS ASGMSRKRKA ENSRLFDARF HGINSELSCN  420
KSRLVHHDHI QLKNINSTHY IRTTQASHDT SLIVKDGYEW RKYGQKVTRD NPYPRAYFKC  480
SFAPTCPVKK KVQRSADDKS IIVATYEGEH NHSKVLLETG EGSSDQLVNG NRTISINTAA  540
IRRSHNKQPE FHKLLIDQMA SSLIKDPKFD AALAAALSRK TILPHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2pq6_A	1e-21	33	339	121	452	UDP-glucuronosyl/UDP-glucosyltransferase
6jtd_A	1e-21	2	351	83	462	C-glycosyltransferase
6jtd_B	1e-21	2	351	83	462	C-glycosyltransferase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable glucosyltransferase that cannot glycosylate abscisic acid (ABA) and auxin (IAA). {ECO:0000269\|PubMed:28482127}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015059318.1	0.0	UDP-glycosyltransferase 73C4-like
Swissprot	K4D422	1e-129	U73C4_SOLLC; UDP-glycosyltransferase 73C4
TrEMBL	M1CSI5	0.0	M1CSI5_SOLTU; Glycosyltransferase
STRING	PGSC0003DMT400073709	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	2e-55	WRKY DNA-binding protein 40

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Sun Y, et al. Suppressing ABA uridine diphosphate glucosyltransferase (SlUGT75C1) alters fruit ripening and the stress response in tomato. Plant J., 2017. 91(4): p. 574-589 [PMID:28482127]