 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_06188.1_g00003.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
LBD |
Protein Properties |
Length: 169aa MW: 18555.2 Da PI: 7.1402 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_06188.1_g00003.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 121.7 | 4e-38 | 6 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C aC++lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r +++ +l+yeA+ar+rdPvyG+v+ il+lqq
Sme2.5_06188.1_g00003.1 6 PCGACRFLRRKCEKGCIFAPYFDSQQgMAHFAAVHKVFGASNASKLLLTIPPHKRLETVVTLCYEARARVRDPVYGCVADILDLQQ 91
7*********************999988********************************************************** PP
DUF260 86 qleqlkaelallke 99
q +l+aela++++
Sme2.5_06188.1_g00003.1 92 QAVTLQAELAYVQA 105
**********9986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MSSGGPCGAC RFLRRKCEKG CIFAPYFDSQ QGMAHFAAVH KVFGASNASK LLLTIPPHKR 60 LETVVTLCYE ARARVRDPVY GCVADILDLQ QQAVTLQAEL AYVQACISTL QQQQQQYHHH 120 HHPMPPPTPS QADVAAACCS NISSSVCIDP SVDIRELCNV LDQQLDNSM
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975513 | 2e-61 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |