PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06171.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 453aa    MW: 51299.6 Da    PI: 9.2807
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06171.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix911.2e-2861144186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+ +e+laL+++r+em+ ++r+++lk plW+e+s+km e g++r++k+C+ek+en+ k++k++k+g+++r  ++ +++++f+qle
  Sme2.5_06171.1_g00008.1  61 RWPYEETLALLKIRSEMDLAFRDSNLKSPLWDEISRKMGELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QKGKNYRFFEQLE 144
                              8********************************************************************98..56668******97 PP
2trihelix99.72.4e-31361446186
                 trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW+k ev aLi++r+++++++++ g++k+plWee+s  m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ql
  Sme2.5_06171.1_g00008.1 361 RWPKAEVEALIKLRTNVDSQYQDnGSSKGPLWEEISLGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PEDSKTCPYFHQL 445
                              8*********************7589*********************************************8.99**********9 PP

                 trihelix  86 e 86 
                              +
  Sme2.5_06171.1_g00008.1 446 D 446
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001258120IPR001005SANT/Myb domain
PfamPF138371.3E-1960144No hitNo description
CDDcd122034.89E-2360125No hitNo description
PROSITE profilePS500907.3460118IPR017877Myb-like domain
SMARTSM007170.16358421IPR001005SANT/Myb domain
CDDcd122035.16E-22360426No hitNo description
PROSITE profilePS500906.853360419IPR017877Myb-like domain
PfamPF138371.7E-23360448No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLESSVLLEN TAAGGAVAVA VAGSQAGELK NDGGGGGGGG GSGSIGGGSE EEDKNFSGGN  60
RWPYEETLAL LKIRSEMDLA FRDSNLKSPL WDEISRKMGE LGYNRNAKKC REKFENIYKY  120
HKRTKDGRSG RQKGKNYRFF EQLELLDSQS SPSSNHNQIN RMDTMPVPMP MPMTMIKPAG  180
SGCQDFRMDK TRGFNPEFMS TSTSMTSSSG KESDGSVKKR RKLAGYFQRL MKEVLEKQED  240
LQNKFLEAIE KCERERKARE EAWKMQEMAR LKKEQEALAH ERAISAAKDA AVIALLQKIS  300
EQTIQLQLPT DLLPQVSQRN TESESMRTVG ENVLLQQEND KENIDSAGEN SNSFQTNTSS  360
RWPKAEVEAL IKLRTNVDSQ YQDNGSSKGP LWEEISLGMK KLGYDRNAKR CKEKWENINK  420
YYRRVKESQK KRPEDSKTCP YFHQLDSIYQ NKW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-168HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249868.10.0trihelix transcription factor GT-2
RefseqXP_015058123.10.0trihelix transcription factor GT-2-like
SwissprotQ391173e-71TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7IP070.0A0A3Q7IP07_SOLLC; Uncharacterized protein
STRINGSolyc11g005380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-59Trihelix family protein