PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06080.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 777aa MW: 88352.3 Da PI: 10.2602

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06080.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.5	1.2e-15	61	125	2	64
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 W++qe+++ i++r e+e ++++k k+lW v+++m erg++rs +qCk+kw+ l + yk+ Sme2.5_06080.1_g00001.1 61 WSNQETRDFIAVRGELEMGFSSAKrsNLKNLWGIVAARMNERGYRRSVEQCKSKWKTLINHYKRS 125 ******************986522669********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.236	53	119	IPR017877	Myb-like domain
CDD	cd12203	2.61E-16	61	125	No hit	No description
Pfam	PF13837	1.5E-14	61	125	No hit	No description
PROSITE profile	PS50878	9.101	355	636	IPR000477	Reverse transcriptase domain
SuperFamily	SSF56672	1.01E-9	379	595	No hit	No description
Pfam	PF00078	3.5E-38	381	582	IPR000477	Reverse transcriptase domain
CDD	cd01650	9.99E-37	382	582	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MFGGNNENLG PFTQRLMLPQ HPLHLLPGGS ISAVAAGGGS AGRGVGGDDE FPKRDDRVAL 60 WSNQETRDFI AVRGELEMGF SSAKRSNLKN LWGIVAARMN ERGYRRSVEQ CKSKWKTLIN 120 HYKRSGGARN VGKLGMEENG SLLGMVVTHS TGCWPADLRR DWVWVKGDGR KVPSKVKVSY 180 DGFDYNIPIW CEMPVTVSTP GKRSEEDESN SLGKNPLYRY TEKNPVINAL NHVGTSKEGG 240 WEARVKTREK ELSNKGQFRM GLYGETKVEG DITDLVKEVR GNKWGNFVQL EASGTRGGIV 300 IMCDKRDWEG EGRKGRNLEG DRGCQGTVPR GKPGFVLAAK LKALKDKLKE WSKTSQGNLG 360 MQKQHVLNQL AELVVGAVEL TDFRPISLIG GVYKIMAKML AERMKKVTRR LVNRQQMAFI 420 KGRQIMDAVL IANECVESRQ RSKLPGILCK LDIQKGYDHL SWEFLLVMLK KMGFGAKWIS 480 WVRSCISTVR FSVLVNRNPC GFFPSQRGLR QGDPLSPFLF ILTMEGLYNL METAKRSGWI 540 RGFQVDNSNT QELEITHLQY VDDTLIFCEA EREQLLCLRA IFTIFEPSFD FRWKNWHLPT 600 LYLGMPLGAK SKSKEIWSRV IEKCEKKLTN WKTQYLSRGA RLTLINSVLD AIPTYMMSVF 660 PVPENVIQRI DALRRNFLWQ GSEDKKKFHL IKWEEVLISR KEGGMGLRNM KKQNRSLMLK 720 WLWKFMTGDN ILWKEVVKAK YGLESKLFYM AAGKGGGFDT GKFEKEEISD EFKMLSV

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MFGGNNENLG PFTQRLMLPQ HPLHLLPGGS ISAVAAGGGS AGRGVGGDDE FPKRDDRVAL  60
WSNQETRDFI AVRGELEMGF SSAKRSNLKN LWGIVAARMN ERGYRRSVEQ CKSKWKTLIN  120
HYKRSGGARN VGKLGMEENG SLLGMVVTHS TGCWPADLRR DWVWVKGDGR KVPSKVKVSY  180
DGFDYNIPIW CEMPVTVSTP GKRSEEDESN SLGKNPLYRY TEKNPVINAL NHVGTSKEGG  240
WEARVKTREK ELSNKGQFRM GLYGETKVEG DITDLVKEVR GNKWGNFVQL EASGTRGGIV  300
IMCDKRDWEG EGRKGRNLEG DRGCQGTVPR GKPGFVLAAK LKALKDKLKE WSKTSQGNLG  360
MQKQHVLNQL AELVVGAVEL TDFRPISLIG GVYKIMAKML AERMKKVTRR LVNRQQMAFI  420
KGRQIMDAVL IANECVESRQ RSKLPGILCK LDIQKGYDHL SWEFLLVMLK KMGFGAKWIS  480
WVRSCISTVR FSVLVNRNPC GFFPSQRGLR QGDPLSPFLF ILTMEGLYNL METAKRSGWI  540
RGFQVDNSNT QELEITHLQY VDDTLIFCEA EREQLLCLRA IFTIFEPSFD FRWKNWHLPT  600
LYLGMPLGAK SKSKEIWSRV IEKCEKKLTN WKTQYLSRGA RLTLINSVLD AIPTYMMSVF  660
PVPENVIQRI DALRRNFLWQ GSEDKKKFHL IKWEEVLISR KEGGMGLRNM KKQNRSLMLK  720
WLWKFMTGDN ILWKEVVKAK YGLESKLFYM AAGKGGGFDT GKFEKEEISD EFKMLSV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	4e-75	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	3e-15	Trihelix family protein