PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06079.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 314aa MW: 35052 Da PI: 4.5295

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06079.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	28.5	3e-09	235	267	3	35
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKri 35 +++l+d + y +l++++AAk+L+vc+Tv+K+i Sme2.5_06079.1_g00003.1 235 GKMRLKDFAGYLHLTMEEAAKKLNVCPTVMKKI 267 678999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	2.7E-8	237	267	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDNLKTSIVP YHDPTHDDSL IHISLFDENP TIDGDDLQPT IDENLTNLNF DFGVSDYDPY 60 TDPVLVDISY NHLIGSSRNA DQGNSNCQIL REITHADGLL VSKLGIFGTL GKVSHASLQK 120 YTMGFHDQNH VSSQKFDFSN DSISNVKQFL VQYFDNCKND GYMVIDDPLS DFYQALGVGC 180 DGGDFIDVDG LLQLSPTTSD DFQMDRQEMI NESEGTSSDV KPEKLSLSAQ RQRTGKMRLK 240 DFAGYLHLTM EEAAKKLNVC PTVMKKINSI KRKISERGKS LSSADVEERK SAKADIKNLE 300 EELANIYEAI NGKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544863.1	1e-123	PREDICTED: uncharacterized protein LOC107845121
TrEMBL	A0A2G2VV87	1e-122	A0A2G2VV87_CAPBA; Uncharacterized protein
STRING	XP_009608942.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27