PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05996.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 293aa MW: 32415 Da PI: 7.2176

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05996.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	171	216	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ Sme2.5_05996.1_g00003.1 171 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 216 899**********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-14	167	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.68	169	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	171	225	No hit	No description
Pfam	PF00170	3.2E-10	171	215	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-14	171	222	No hit	No description
CDD	cd14703	2.91E-24	172	222	No hit	No description
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAQLPPKVPT MAHNWPFQNM PPLPNSSTIV ANHHSTNSWV DDFLDFSSAR RNSHRRSVSD 60 PIAFVEAPFL QLSGSNNGFD KLDDEQLTTM FSDNSCGGAA FAVTAPPSNP SSTNPSTPSD 120 QKSPVRLVDV NQVVQPKNEP GEDESDNQSP AATKNPVNDS SDNNNSIVDP KRIKRILANR 180 QSAQRSRVRK LQYISELERS VTTLQTEVSA LSPRVAFLDH QRLLLNVDNS ALRQRIAALA 240 QDKIFKDAHQ EALKKEIERL RQIYHEQNMK KVNNSGTANT PPAPAPMSCT EEA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-118	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	1e-118	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348282.1	1e-176	PREDICTED: basic leucine zipper 34-like
Swissprot	Q9M2K4	2e-88	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	M1AXB9	1e-167	M1AXB9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400032381	1e-167	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	7e-61	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]