PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 652aa MW: 66991.7 Da PI: 7.7165

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05989.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sme2.5_05989.1_g00001.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	15.9	3.6e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + Sme2.5_05989.1_g00001.1 132 WKCDKCSKKYAVQSDLKAHVKIC 154 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.7E-8	55	78	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	56	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	97	127	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-5	120	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.7E-8	127	152	No hit	No description
PROSITE profile	PS50157	8.746	132	160	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	132	152	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MSDCAGSGEA SVSASGDKAA PCKEAAKKKR NLPGMPDPDA EVVALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKRVYVCP EPTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH VKICGTKEYK CDCGTMFSRR DSFITHRAFC 180 DVLAKDSEKA QNAVTAPISD EDCKVPAVVS STPPTPPTSP PASEPSAVPS PAVPEPLPPP 240 VTPSTAVVSS DSPIQNPELG ESPCTNSDGT ITKQVMDETM AKSRLSGLCS SSSCTGYTNS 300 NDFTSLTGIC SSRSSSSNGS TSSNSIFPSL AGIRSSTRSS SSNGSTSSIS VFPSLTGICS 360 NSRSSSSNGS SSSSSIFASS TGICSGSSTF ASSTGICSSS SSLSSNRSST HSSIFTSLTG 420 ICSSSSNSSS SIGSASNSTF ASLFASSTAS GSLPSEAPQF TDWFQTVAPA PPPDIEPSSS 480 MEPISLCLAM NHSSSVFGPA GQERMQYAAA PQPAMSATAL LQKAAQMGAT ATNSSLLMGL 540 GILSSSSSSS GQHEWSGRQI DADGATLAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT 600 LDLLGLGMAA GGGPTPGLSA LITSMGGNLD VAATAGSFDS GEFCGKELGR SL

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MSDCAGSGEA SVSASGDKAA PCKEAAKKKR NLPGMPDPDA EVVALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKRVYVCP EPTCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH VKICGTKEYK CDCGTMFSRR DSFITHRAFC  180
DVLAKDSEKA QNAVTAPISD EDCKVPAVVS STPPTPPTSP PASEPSAVPS PAVPEPLPPP  240
VTPSTAVVSS DSPIQNPELG ESPCTNSDGT ITKQVMDETM AKSRLSGLCS SSSCTGYTNS  300
NDFTSLTGIC SSRSSSSNGS TSSNSIFPSL AGIRSSTRSS SSNGSTSSIS VFPSLTGICS  360
NSRSSSSNGS SSSSSIFASS TGICSGSSTF ASSTGICSSS SSLSSNRSST HSSIFTSLTG  420
ICSSSSNSSS SIGSASNSTF ASLFASSTAS GSLPSEAPQF TDWFQTVAPA PPPDIEPSSS  480
MEPISLCLAM NHSSSVFGPA GQERMQYAAA PQPAMSATAL LQKAAQMGAT ATNSSLLMGL  540
GILSSSSSSS GQHEWSGRQI DADGATLAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT  600
LDLLGLGMAA GGGPTPGLSA LITSMGGNLD VAATAGSFDS GEFCGKELGR SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-30	128	186	3	61	Zinc finger protein JACKDAW
5b3h_F	6e-30	128	186	3	61	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174607	0.0	AC174607.1 Solanum lycopersicum, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233509.1	0.0	protein indeterminate-domain 1-like
Swissprot	Q9LVQ7	1e-114	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A3Q7EZH3	0.0	A0A3Q7EZH3_SOLLC; Uncharacterized protein
STRING	Solyc02g062940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-95	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]