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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05931.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 907aa MW: 100094 Da PI: 6.9716 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53 | 5.8e-17 | 14 | 72 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r++L + +++ +q+kvWFqNrR +ek+ Sme2.5_05931.1_g00001.1 14 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRDSpilsNIEPKQIKVWFQNRRCREKQ 72 5679***************************9999999*******************97 PP | |||||||
2 | START | 169.5 | 2.2e-53 | 162 | 369 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 +aee+++e++ ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +l vi + Sme2.5_05931.1_g00001.1 162 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPT 246 68999*****************************************************.8888888888***************** PP T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167 g g+++l++ +++a+++l+ Rdf+++Ry+ +l++g++vi+++S++ + p+ s+vRae+lpSg+li+p+++g+s +++v Sme2.5_05931.1_g00001.1 247 GngGTIELIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIV 332 *************************************************999998999**************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 +h+dl++++++++lr+l++s+ + ++k+++a+l++ + Sme2.5_05931.1_g00001.1 333 DHIDLDAWSVPEVLRPLYESSKILAQKMTMAALRHIR 369 *********************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.337 | 9 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-14 | 11 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-15 | 13 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.17E-15 | 14 | 74 | No hit | No description |
Pfam | PF00046 | 1.7E-14 | 15 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 7.78E-6 | 66 | 105 | No hit | No description |
PROSITE profile | PS50848 | 26.515 | 152 | 380 | IPR002913 | START domain |
CDD | cd08875 | 1.54E-70 | 156 | 372 | No hit | No description |
SMART | SM00234 | 4.4E-51 | 161 | 371 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.3E-23 | 161 | 366 | IPR023393 | START-like domain |
Pfam | PF01852 | 6.6E-51 | 162 | 369 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.83E-38 | 162 | 373 | No hit | No description |
Pfam | PF08670 | 5.1E-37 | 690 | 814 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MALRGEKNDM DNGKYVRYTP EQVEALERVY AECPKPTSLR RQQLIRDSPI LSNIEPKQIK 60 VWFQNRRCRE KQRKEASRLQ TVNRKLSAMN KLLMEENDRL QKQVSQLVYE NGYMKQQINT 120 VSSTTTDTSC ESVVVSGQQQ RKNPTPQHPE RDANNPAGLL AIAEETLAEF LGKATGTAVD 180 WVQMIGMKPG PDSIGIVAVS RNCSGVAARA CGLVSLEPTK VAEILKDRPS WYRDCRCLNV 240 LSVIPTGNGG TIELIYLQTY APTTLATARD FWTLRYTTSL EDGSLVICER SLTTATGGPT 300 GPPATSFVRA EMLPSGYLIR PCEGGGSMIH IVDHIDLDAW SVPEVLRPLY ESSKILAQKM 360 TMAALRHIRQ IAQETSGEIQ YTGGRQPAVL RALSQRLCRG FNDAVNGFVD DGWNIMDSDG 420 VEDVTIAINS SSSTLSILPT FGGVLCARAS MLLQNVPPAL LVRFVREHRS EWADYGVDAY 480 SAASLKASPY AVPCARPGGF PSSQVILPLA QTVEHEEFLE VVRLEGPAFS PEDIALSRDM 540 YLLQLCSGVD ENAAGACAQL VFAPIDESFG DDAPLLPSGF RVIPLEPKSD VPAATRTLDL 600 ASTLEAGTGG SGTRPASEIE AGNYNHRSVL TIAFQFTFES HYQDNVAAMA RQYVRSIVGS 660 VQRVAMAIAP SRLSSQLTPK PFPVSPEAVT LARWISRSYR VHTGGDLFQV DSQAGDAVLK 720 QLWHHSDAVM CCSVKMNASA VFTFANQAGL DMLETTLLAL QDIMLDKILD EAGRKVLLSE 780 FSNIMQQGFA YLPAGICVSS MGRPVSYERA IAWKGSMDEM EACLEVLCDK KISPELKEEG 840 RGDLYGRQDE KVRLRWFGHV RRRSVDAPVR RCERFNLGVM WKERGRSKKH WGKVLDNICH 900 NFILPRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00170 | DAP | Transfer from AT1G30490 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560320 | 0.0 | AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds. | |||
GenBank | JQ686932 | 0.0 | JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363649.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like | ||||
Refseq | XP_015066689.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | M1AUU8 | 0.0 | M1AUU8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400030829 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30490.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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