PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05931.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 907aa    MW: 100094 Da    PI: 6.9716
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05931.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.8e-171472357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le++++++++p+  +r++L +      +++ +q+kvWFqNrR +ek+
  Sme2.5_05931.1_g00001.1 14 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRDSpilsNIEPKQIKVWFQNRRCREKQ 72
                             5679***************************9999999*******************97 PP

2START169.52.2e-531623692204
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +
  Sme2.5_05931.1_g00001.1 162 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPT 246
                              68999*****************************************************.8888888888***************** PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              g  g+++l++ +++a+++l+  Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v
  Sme2.5_05931.1_g00001.1 247 GngGTIELIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIV 332
                              *************************************************999998999**************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +h+dl++++++++lr+l++s+ + ++k+++a+l++ +
  Sme2.5_05931.1_g00001.1 333 DHIDLDAWSVPEVLRPLYESSKILAQKMTMAALRHIR 369
                              *********************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.337973IPR001356Homeobox domain
SMARTSM003893.6E-141177IPR001356Homeobox domain
SuperFamilySSF466895.56E-151376IPR009057Homeodomain-like
CDDcd000865.17E-151474No hitNo description
PfamPF000461.7E-141572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-171672IPR009057Homeodomain-like
CDDcd146867.78E-666105No hitNo description
PROSITE profilePS5084826.515152380IPR002913START domain
CDDcd088751.54E-70156372No hitNo description
SMARTSM002344.4E-51161371IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-23161366IPR023393START-like domain
PfamPF018526.6E-51162369IPR002913START domain
SuperFamilySSF559617.83E-38162373No hitNo description
PfamPF086705.1E-37690814IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009880Biological Processembryonic pattern specification
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MALRGEKNDM DNGKYVRYTP EQVEALERVY AECPKPTSLR RQQLIRDSPI LSNIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ TVNRKLSAMN KLLMEENDRL QKQVSQLVYE NGYMKQQINT  120
VSSTTTDTSC ESVVVSGQQQ RKNPTPQHPE RDANNPAGLL AIAEETLAEF LGKATGTAVD  180
WVQMIGMKPG PDSIGIVAVS RNCSGVAARA CGLVSLEPTK VAEILKDRPS WYRDCRCLNV  240
LSVIPTGNGG TIELIYLQTY APTTLATARD FWTLRYTTSL EDGSLVICER SLTTATGGPT  300
GPPATSFVRA EMLPSGYLIR PCEGGGSMIH IVDHIDLDAW SVPEVLRPLY ESSKILAQKM  360
TMAALRHIRQ IAQETSGEIQ YTGGRQPAVL RALSQRLCRG FNDAVNGFVD DGWNIMDSDG  420
VEDVTIAINS SSSTLSILPT FGGVLCARAS MLLQNVPPAL LVRFVREHRS EWADYGVDAY  480
SAASLKASPY AVPCARPGGF PSSQVILPLA QTVEHEEFLE VVRLEGPAFS PEDIALSRDM  540
YLLQLCSGVD ENAAGACAQL VFAPIDESFG DDAPLLPSGF RVIPLEPKSD VPAATRTLDL  600
ASTLEAGTGG SGTRPASEIE AGNYNHRSVL TIAFQFTFES HYQDNVAAMA RQYVRSIVGS  660
VQRVAMAIAP SRLSSQLTPK PFPVSPEAVT LARWISRSYR VHTGGDLFQV DSQAGDAVLK  720
QLWHHSDAVM CCSVKMNASA VFTFANQAGL DMLETTLLAL QDIMLDKILD EAGRKVLLSE  780
FSNIMQQGFA YLPAGICVSS MGRPVSYERA IAWKGSMDEM EACLEVLCDK KISPELKEEG  840
RGDLYGRQDE KVRLRWFGHV RRRSVDAPVR RCERFNLGVM WKERGRSKKH WGKVLDNICH  900
NFILPRT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00170DAPTransfer from AT1G30490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363649.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
RefseqXP_015066689.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLM1AUU80.0M1AUU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000308290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]