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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_05906.1_g00002.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
M-type_MADS |
| Protein Properties |
Length: 221aa MW: 25003.6 Da PI: 10.13 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_05906.1_g00002.1 | genome | EGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 65.7 | 4.9e-21 | 17 | 63 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
ie k qvtfskRr g++KKA+EL++LC++e+a+++fs+ k++ +
Sme2.5_05906.1_g00002.1 17 IEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPARKVFSF 63
7778889**********************************999887 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MAKKPSMGRQ KIKIVKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPARKV 60
FSFGHPNVES ITERFLTRNN SDSNPIANNS LHLVESHRNA SVRGLNLQLT QILGEVEIEK 120
KRGASLDQMR KTSQSQYWWE APINQLDLQE LEQLKNSMEA LKQNVTNLAN KFIVNETANP 180
PFFDINGNGI FDNYDIKPPR TMVASHNLHN HSLGFDSATI F
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC240204 | 0.0 | AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence. |
| GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
| GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
| Publications
? help Back to Top |
- Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization.
Nat Plants, 2015. 1: p. 15184
[PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis.
Elife, 2017.
[PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
Plant Signal Behav, 2017. 12(8): p. e1339000
[PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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