PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_05811.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 243aa MW: 27640.8 Da PI: 7.32

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05811.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.7e-06	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C +sF+++ L H++ H Sme2.5_05811.1_g00001.1 86 YECHYCFRSFPTSQALGGHQNAH 108 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.5E-6	84	113	No hit	No description
Pfam	PF13912	3.2E-6	86	110	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.427	86	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0010091	Biological Process	trichome branching
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MENKIEREAH DFMNVESFSQ LPIIRPVKEK PIRLFGKEFG GGGDSTSTMT TINMAESIDS 60 NPFHHELQTN TKASQIDMTV EINRKYECHY CFRSFPTSQA LGGHQNAHKK ERQNAKQAHL 120 QSSIVHDQSS IYRTMNRHRL GEIGAATIRT THHHSTWTNV NNITPRFYGN GHNVNVTSPL 180 AFWQTPPAIH HNNSSTSNNF VFSNHDDLIR TSPMVKISTN CESNFVYEPK GEVEDLVTLD 240 LHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554929.1	1e-107	PREDICTED: zinc finger protein GIS-like
TrEMBL	M1ATE8	1e-113	M1ATE8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400029797	1e-114	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1473	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	3e-33	C2H2 family protein