PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Sme2.5_05676.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 141aa MW: 15776.1 Da PI: 7.1878

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05676.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.3	9.4e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +Ca+Ck+lrr+CakdC+++pyfp ++ +kfa+vhk+FGasnv+k+l++lp +er da+sslvyeA+ar+rdPvyG+vg i lq++ Sme2.5_05676.1_g00006.1 7 PCASCKLLRRRCAKDCIFSPYFPCHDLHKFAIVHKVFGASNVSKILQELPVNERADAVSSLVYEANARMRDPVYGCVGAIYVLQNE 92 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ql+ +la++++e Sme2.5_05676.1_g00006.1 93 VSQLQMQLAMAQAE 106 *******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.049	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-41	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC HDLHKFAIVH KVFGASNVSK ILQELPVNER 60 ADAVSSLVYE ANARMRDPVY GCVGAIYVLQ NEVSQLQMQL AMAQAEILSI HMQSHPPLPH 120 LHDYLNFDTC SNSQDGLFHW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-57	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353440.1	2e-78	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-66	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	M1C7L9	4e-77	M1C7L9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400061511	8e-78	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-60	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]