PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05567.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 370aa    MW: 41990.4 Da    PI: 8.591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05567.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07215237123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++Cgk F+r  nL+ H+r H
  Sme2.5_05567.1_g00006.1 215 HYCQICGKGFKRDANLRMHMRAH 237
                              68*******************99 PP
2zf-C2H210.60.0018310333123
                              EEETTTT.EEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                              y+C+ C+ k Fs  s+L++H + +
  Sme2.5_05567.1_g00006.1 310 YVCKRCNkKNFSVLSDLRTHEKHC 333
                              9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.02E-6214239No hitNo description
Gene3DG3DSA:3.30.160.603.2E-6215241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632215242IPR007087Zinc finger, C2H2
SMARTSM003550.0028215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SMARTSM00355150272305IPR015880Zinc finger, C2H2-like
SMARTSM0035534310332IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYSSIDHHHN IQEDMFSSSL IHNSHQQNSF LFNLSLLKEK VHQVQSLATM FISSDSQTII  60
HQPPESTSMI IASMGSLIQE IITISSSLMF SCQKITLDPS SVSQNSSRFH EPSQIKIQDD  120
GGHGRGHGQG QVDQLLQDYN WYEENYNSCN THDDNKSHVT NSIIASTSTI SHDDHSKVFG  180
KREILLSKGK VVNEENHKYD IIELDASDLL AKYTHYCQIC GKGFKRDANL RMHMRAHGDE  240
YKSSAALSNP LKKINDLTNN GLSNSISNKI KYSCPQEGCR WNRKHAKFQP LKSMVCAKNH  300
YKRSHCPKMY VCKRCNKKNF SVLSDLRTHE KHCGDLKWQC SCGTTFSRKD KLMGHVSLFV  360
GHTPLIKESG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546716.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-105STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1U8EK000.0A0A1U8EK00_CAPAN; zinc finger protein STOP1 homolog
TrEMBLA0A2G3BBB90.0A0A2G3BBB9_CAPCH; Zinc finger protein STAR3
STRINGSolyc11g066420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-91C2H2 family protein