PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 515aa MW: 58491.4 Da PI: 5.3085

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05282.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	343	5.1e-105	117	508	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn............. 73 l++lL++cA+av+sgd+e a++ L+++++ +sp+gd qRla++f+ +L+arl+r + +l+k p + + Sme2.5_05282.1_g00003.1 117 LRTLLTSCAQAVASGDQESASEKLKQIRQESSPTGDKYQRLASVFADGLEARLSRGGATLSKGGPIEFLTLPGtavqpyptlapkk 202 6789*************************************************9998887544332221111234555666667 PP GRAS 74 ...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154 +++l+a+++ +P++k s aN++I + +++++HiiDf+i +G+QWp L+q L+s p+gpp+lRiTg++ p++g Sme2.5_05282.1_g00003.1 203 mtnAADNLKAYNVHLSSCPFIKASIAFANKMIFHTARNATTLHIIDFGILYGFQWPVLIQRLSSMPGGPPKLRITGIDLPQPGfrP 288 77799999999*******************************************************************9* PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal.aVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239 ++ l etg+rLa +++++++pfe+n+++++++e +el++L++++gE++ aVn+ ++ ++l de +++e +rd+vL+l+++++P+++ Sme2.5_05282.1_g00003.1 289 AQVLAETGRRLATYCQRFNIPFEYNAIAEQNWERIELKDLKLESGEVVaAVNCLFRFENLSDEGMDVECPRDAVLSLIRKMNPDIF 374 ************************9999************9946******************************** PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 v + ++++ns+ F++rf eal +ysalfd+++a+lpr++++r E+e+ +re++nv+acegaer+er et+e+W+ r e+ GFk Sme2.5_05282.1_g00003.1 375 VQAVTNSSYNSPFFVTRFQEALLHYSALFDMFDATLPRDDQQRLHFEQEVYRREAMNVIACEGAERVERPETYEQWQVRNERTGFK 460 ********************************************************************************** PP GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +pl+++++k+ k ++ + + + + e+ +++v+gWkdr + ++S+W Sme2.5_05282.1_g00003.1 461 ILPLDQEVMKTLKDKVKAEYHRDFVLYEDGNWMVQGWKDRIICATSCW 508 *************999899*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.44	91	489	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-102	117	508	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MDTEKFKKCF PPMNCYVMRI QNSRDFDVMD PRFNDMTDPT NNSKLEDQTV LSSFDQPLHK 60 DESSNEQSAE YAEEVELAEM FDMVLLCTHA KGKKVSTDIN SEISSEGKET KISAVDLRTL 120 LTSCAQAVAS GDQESASEKL KQIRQESSPT GDKYQRLASV FADGLEARLS RGGATLSKGG 180 PIEFLTLPGT AVQPYPTLAP KKMTNAADNL KAYNVHLSSC PFIKASIAFA NKMIFHTARN 240 ATTLHIIDFG ILYGFQWPVL IQRLSSMPGG PPKLRITGID LPQPGFRPAQ VLAETGRRLA 300 TYCQRFNIPF EYNAIAEQNW ERIELKDLKL ESGEVVAAVN CLFRFENLSD EGMDVECPRD 360 AVLSLIRKMN PDIFVQAVTN SSYNSPFFVT RFQEALLHYS ALFDMFDATL PRDDQQRLHF 420 EQEVYRREAM NVIACEGAER VERPETYEQW QVRNERTGFK ILPLDQEVMK TLKDKVKAEY 480 HRDFVLYEDG NWMVQGWKDR IICATSCWIP LHRSG

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MDTEKFKKCF PPMNCYVMRI QNSRDFDVMD PRFNDMTDPT NNSKLEDQTV LSSFDQPLHK  60
DESSNEQSAE YAEEVELAEM FDMVLLCTHA KGKKVSTDIN SEISSEGKET KISAVDLRTL  120
LTSCAQAVAS GDQESASEKL KQIRQESSPT GDKYQRLASV FADGLEARLS RGGATLSKGG  180
PIEFLTLPGT AVQPYPTLAP KKMTNAADNL KAYNVHLSSC PFIKASIAFA NKMIFHTARN  240
ATTLHIIDFG ILYGFQWPVL IQRLSSMPGG PPKLRITGID LPQPGFRPAQ VLAETGRRLA  300
TYCQRFNIPF EYNAIAEQNW ERIELKDLKL ESGEVVAAVN CLFRFENLSD EGMDVECPRD  360
AVLSLIRKMN PDIFVQAVTN SSYNSPFFVT RFQEALLHYS ALFDMFDATL PRDDQQRLHF  420
EQEVYRREAM NVIACEGAER VERPETYEQW QVRNERTGFK ILPLDQEVMK TLKDKVKAEY  480
HRDFVLYEDG NWMVQGWKDR IICATSCWIP LHRSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-41	124	510	25	379	Protein SCARECROW
5b3h_D	3e-41	124	510	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015169567.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	1e-166	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M0ZPY5	0.0	M0ZPY5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400005480	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-168	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]