PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05234.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 412aa MW: 44480.7 Da PI: 7.743

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05234.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.3e-06	33	44	14	25
--TTTTT-SS-S CS zf-CCCH 14 tCkyGdrCkFaH 25 C+yG+rCkF H Sme2.5_05234.1_g00003.1 33 SCQYGERCKFLH 44 6*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.5E-4	32	47	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MSFRVKEYDW WLTKWVENCG VSISNPNEGR NTSCQYGERC KFLHAAQQQP KPNPFGFGSQ 60 STNFQSTNMQ QTKPNPFGFG VQSNSQPRGS NDLGLKQNQY KPFENKWTRS ASANSSSSRQ 120 ADNQPVAPTH ICTDAESCRR QIVEDFNNEK PLWLLTCYGH RKNGPCDITG DVSYEELRAA 180 AYDDAKRGQS LISIVERERS MVNSKVAEFE NLLRNPYAST STSAPTAQSP FPGIRGAQSP 240 FPGATPSAQS PFPGATPSAQ SPFPEVNPGA STPPTSTFGQ PSLLGNSFKT SNSSGANAFS 300 FGNTSASGSF GFGTQVPAHS YQNPSTPSNV SASSGRNLFS TSTTAPPFAN PSGGQLPTPS 360 QGLFPAMTSP VSISLTNSAS PEDFTGDNSI WTKKEWKIGE IPEEAPPDRY VY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MSFRVKEYDW WLTKWVENCG VSISNPNEGR NTSCQYGERC KFLHAAQQQP KPNPFGFGSQ  60
STNFQSTNMQ QTKPNPFGFG VQSNSQPRGS NDLGLKQNQY KPFENKWTRS ASANSSSSRQ  120
ADNQPVAPTH ICTDAESCRR QIVEDFNNEK PLWLLTCYGH RKNGPCDITG DVSYEELRAA  180
AYDDAKRGQS LISIVERERS MVNSKVAEFE NLLRNPYAST STSAPTAQSP FPGIRGAQSP  240
FPGATPSAQS PFPGATPSAQ SPFPEVNPGA STPPTSTFGQ PSLLGNSFKT SNSSGANAFS  300
FGNTSASGSF GFGTQVPAHS YQNPSTPSNV SASSGRNLFS TSTTAPPFAN PSGGQLPTPS  360
QGLFPAMTSP VSISLTNSAS PEDFTGDNSI WTKKEWKIGE IPEEAPPDRY VY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015061935.1	0.0	zinc finger CCCH domain-containing protein 16
TrEMBL	A0A3Q7J3J8	0.0	A0A3Q7J3J8_SOLLC; Uncharacterized protein
TrEMBL	M0ZT36	0.0	M0ZT36_SOLTU; Uncharacterized protein
STRING	Solyc12g009390.1.1	0.0	(Solanum lycopersicum)
STRING	PGSC0003DMT400007502	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9439	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	3e-63	C3H family protein