PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05137.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 351aa    MW: 38507.4 Da    PI: 9.9442
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05137.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.1e-1591181186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              +W++  +++Liea  +   +l+rg+l++++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + + + ++p+
  Sme2.5_05137.1_g00001.1  91 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnelhgHTKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHGRYVPQWPF 176
                              7*************************************9888766666799*********************999999999***** PP

                 trihelix  82 fdqle 86 
                              f++l+
  Sme2.5_05137.1_g00001.1 177 FNSLD 181
                              **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-2589182No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MYRRPNHTEC FLPSSLSSAS KPKSAAVVAS TSSPMSDDDL VASPSSNNNT PSPSPSPPPS  60
SVKNELVTLP PPPTIPTPST RPAAFPARED CWSEAATHTL IEAWGSHYLE LKRGNLRQKH  120
WQEVANAVNE LHGHTKKQFR TDIQCKNRID TLKKKYKIEK ARVSQSHGRY VPQWPFFNSL  180
DVLIGDNFKP SPLPVTAAPR RKTPPSLPPP PSAVPVGPRS KRPAAALEDA VSRRNFSAMA  240
AAAAAAASED SDEEEESETS SPATLAAGAL NRRKDNGALA EGCSRLAEAI GRFAEIYERV  300
EDAKQRQMVE LEKQRMQFAK DLESQRMKLI MESQIQLEKL KRAKNSSQAG K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2360470.0AC236047.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 12 clone LE_HBa-210E10, complete sequence.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350027.11e-180PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM1AD261e-179M1AD26_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000201941e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-45sequence-specific DNA binding transcription factors