PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05116.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 542aa    MW: 62119.7 Da    PI: 9.4435
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05116.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.9e-16441537199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                              f   ++p+ v+++ +l  p +f++++ ++  e++ + l+ ++gr+W+ kl ++ +s+   + ++GW++Fv+ n+Lke D++vF+l+
  Sme2.5_05116.1_g00002.1 441 FTISMLPACVSRNFQLDTPVNFFKKYLKD--EETIVNLRVSNGRTWRAKL-FDIQSNCpKIESSGWRDFVHGNNLKEHDTCVFELI 523
                              55678899999***************655..4458***************.555554448899**********************9 PP

                              SSSEE..EEEEE-S CS
                       B3  86 grsefelvvkvfrk 99 
                              +  e  l v++fr+
  Sme2.5_05116.1_g00002.1 524 DGIEPVLDVTIFRA 537
                              88444488888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.673292IPR003340B3 DNA binding domain
CDDcd100173.25E-12390No hitNo description
Gene3DG3DSA:2.40.330.101.2E-16392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-18399IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-5592IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-18438538IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-19438538IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-18439536No hitNo description
PfamPF023623.4E-14441537IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647441538IPR003340B3 DNA binding domain
SMARTSM010192.0E-13441538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSPQFFKIIL SPHASKLHIP DEFVIKYGAD LRDPVSLEVP TGAIWQVKLH NSNCLNEGWN  60
QFKDYYSIAC GYFLLFQYNG NSHFSVFIFD LTASEIQYPC GHKGKGNLGL WYKYVDANNF  120
LLTLSSLADH CNAMTNTSKS NKRKYALNSL TRYPLRSKLE QSKENGSPSY SGKQRPATPL  180
SCRRVKLEKP NFKEDLCWDV TKAKREETNL YDEAYKFKGH CNEVPVVDLS TSKVTTTNQQ  240
SKKKTATNLD ASNCRYPLRS KQLIEGKFEK GDVEDHCNEI PVVDSSNNRH HEKKTSASLD  300
TSQCRYPLRS KQLKEVKLET SNAKEDLLYV AQKDRRKKAN NVMLEKGDVE DHCKEVPVGD  360
PSASATSRHN GKKTMANLDA SRCRYPLRSM QPKEVKLERW ESVGNMHNKM PKKASEMTIL  420
GKKKMLPSEK HNWDRFFNPH FTISMLPACV SRNFQLDTPV NFFKKYLKDE ETIVNLRVSN  480
GRTWRAKLFD IQSNCPKIES SGWRDFVHGN NLKEHDTCVF ELIDGIEPVL DVTIFRAKTP  540
VS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754475e-86HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083829.10.0uncharacterized protein LOC107027163
TrEMBLA0A2G3D2R80.0A0A2G3D2R8_CAPCH; Uncharacterized protein
STRINGSolyc08g029090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-21B3 family protein