PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05093.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 732aa MW: 79034.5 Da PI: 6.6872

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05093.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg Sme2.5_05093.1_g00005.1 309 PCPEFRK-GTCRRGDMCEYAHG 329 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	7.46E-17	35	163	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.04E-15	36	162	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.1E-17	36	164	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2200	37	67	IPR002110	Ankyrin repeat
Pfam	PF12796	1.6E-10	71	153	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0049	84	114	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	16.175	84	192	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	1.3E-5	85	100	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.755	119	154	IPR002110	Ankyrin repeat
SMART	SM00248	0.0027	119	151	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.3E-5	138	152	IPR002110	Ankyrin repeat
SMART	SM00356	7.3E-6	304	330	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-4	308	331	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.31	309	331	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-5	309	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	337	367	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	81	339	362	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MCTGPERPNS SASTNQSITD TTSSMKGITK LTVETEDSFS SLLELAANND LEGFKRFVEL 60 DASAIDEVGL WLVRKKGSKQ IVNEERTPLM VAATYGSLDV LKLIMSNPVV DINRACGPNK 120 CTALHCATSS GSVHAVDAVK LLLSAGADPN VKDANGQRPA DVIIVPPKLS GARASLEELL 180 LNNSSDGSVG DCKLRVSVAT SDASSPILSS SPENGSPCSS LESLSSPTAL KFSDIPANSV 240 REKKEYPIDP SLPDIQNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGTCRR GDMCEYAHGV FECWLPPAQY RTRLCKDGTS CARRICFFAH 360 TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHSVMSP SAFNQPMSPT 420 ANGMSHSTAA WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDFNMLQD FDAQQLVLND 480 VACYSQPRPN SASLNRSGRS KTLTPSNLEE LFTAEMNSSP RFSDQAAASG VFSPSHKSAY 540 FNQFQPQQSM LSPINTNVFS PKNIEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSARLSAFA 600 QREKQQQQLR SLSSRDLGSN NASVVGSPVG NSWSNWGSPN GKVDWTVNGS GLGPLPRSSS 660 FEQLNNGEEP DLSWVQSLVK ESPTEMKEKQ AAPKSGAAPP GESLKSSSQI DSVDHSVLGA 720 WLEQMQLDQL VA

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MCTGPERPNS SASTNQSITD TTSSMKGITK LTVETEDSFS SLLELAANND LEGFKRFVEL  60
DASAIDEVGL WLVRKKGSKQ IVNEERTPLM VAATYGSLDV LKLIMSNPVV DINRACGPNK  120
CTALHCATSS GSVHAVDAVK LLLSAGADPN VKDANGQRPA DVIIVPPKLS GARASLEELL  180
LNNSSDGSVG DCKLRVSVAT SDASSPILSS SPENGSPCSS LESLSSPTAL KFSDIPANSV  240
REKKEYPIDP SLPDIQNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGTCRR GDMCEYAHGV FECWLPPAQY RTRLCKDGTS CARRICFFAH  360
TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHSVMSP SAFNQPMSPT  420
ANGMSHSTAA WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDFNMLQD FDAQQLVLND  480
VACYSQPRPN SASLNRSGRS KTLTPSNLEE LFTAEMNSSP RFSDQAAASG VFSPSHKSAY  540
FNQFQPQQSM LSPINTNVFS PKNIEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSARLSAFA  600
QREKQQQQLR SLSSRDLGSN NASVVGSPVG NSWSNWGSPN GKVDWTVNGS GLGPLPRSSS  660
FEQLNNGEEP DLSWVQSLVK ESPTEMKEKQ AAPKSGAAPP GESLKSSSQI DSVDHSVLGA  720
WLEQMQLDQL VA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538093.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G3DH22	0.0	A0A2G3DH22_CAPCH; Zinc finger CCCH domain-containing protein 30
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]