PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05038.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 490aa    MW: 51398.5 Da    PI: 8.0439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05038.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-115276327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              + C +++rtG+C yG rC+F+H++
  Sme2.5_05038.1_g00001.1 52 VSDCIYYLRTGFCGYGTRCRFNHPR 76
                             578********************96 PP
2zf-CCCH375.5e-1298122327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C++++rtG Ck+G++Ck++H++
  Sme2.5_05038.1_g00001.1  98 QPVCQYYMRTGMCKFGASCKYHHPR 122
                              689********************96 PP
3zf-CCCH35.81.3e-11143168227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++ +tG+Ck+G +CkF+H++
  Sme2.5_05038.1_g00001.1 143 GEKECSYYVKTGQCKFGVTCKFNHPQ 168
                              7899********************97 PP
4zf-CCCH35.61.6e-11316339427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               +C++++++G CkyG++C+++H+p
  Sme2.5_05038.1_g00001.1 316 QECQYYMKYGDCKYGSSCRYHHPP 339
                              58********************97 PP
5zf-CCCH35.61.5e-11361385327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++C++fa++G Ck+G++CkF H++
  Sme2.5_05038.1_g00001.1 361 APICSHFAQNGVCKFGPSCKFDHPM 385
                              589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7134977IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65178IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-95276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55495123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-698122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-898122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333141169IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5143169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638312340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6315339IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9316339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4318339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6357384IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971358386IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-9361385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5363383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MERYSGTQAM EGAPVDPVSE WNVPGGETGL EEPMWELSVG TGTEPYPERP NVSDCIYYLR  60
TGFCGYGTRC RFNHPRDRTS VLGAMRATGG EYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSPAP VTVNVHGYPL RPGEKECSYY VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG  180
PGPMTAPAAV PAPHIYPAVQ SPSVQSAQQY GVVSGNWPVA RPTLIPGSYI PGTYGSMLLP  240
PGMVPLPGWT PYPAPVNPVP SPSTQLAAAA GPMYGLSQLS PSAPAYTGPY LSVPSSAGPS  300
SSSQKEHAFP ERPGLQECQY YMKYGDCKYG SSCRYHHPPE WSGPKTSFIL SAMGLPLRPG  360
APICSHFAQN GVCKFGPSCK FDHPMGMSYS SSSSSLADMA VAPYPVGSTV GTLAPSFSSS  420
DLRPELVSGS GRDGFSTQVS SVSTSSGSVG SMFSKGGPDS HSGVQQSVQS SNPSSGSSSA  480
GHGSEARQSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437121e-156AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence.
GenBankHG9754401e-156HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-156HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342757.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-157C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1C2H30.0M1C2H3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-122C3H family protein