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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04999.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 114aa MW: 13089 Da PI: 9.5401 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.4 | 3.8e-08 | 20 | 94 | 41 | 117 |
NAM 41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkge 117 +ePw++ +ek +yf s+ +++ k+ +r++ +g+Wk + + ++++ ++ ++g k++L ++++++ e Sme2.5_04999.1_g00005.1 20 GSEPWQII----DGEKTCYFLSRLTIFKNSTKKFSRTVGTGTWKGKARGSSICDVskNNVTIGYKRSLRIKEKKQKEEE 94 47999995....467899*****999999999************99888888876547788*********977665544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-7 | 21 | 92 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MLQGVFPPTD FIKVKKVFGG SEPWQIIDGE KTCYFLSRLT IFKNSTKKFS RTVGTGTWKG 60 KARGSSICDV SKNNVTIGYK RSLRIKEKKQ KEEENDDNKE VMEEEVDELI NHLL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549492.1 | 5e-33 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A1U8EQJ5 | 1e-31 | A0A1U8EQJ5_CAPAN; NAC domain-containing protein 78-like | ||||
TrEMBL | A0A2G2V253 | 1e-31 | A0A2G2V253_CAPBA; Uncharacterized protein | ||||
STRING | XP_009761286.1 | 5e-20 | (Nicotiana sylvestris) | ||||
STRING | XP_009604942.1 | 5e-20 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |