PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04976.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 186aa MW: 20849.7 Da PI: 10.1714

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04976.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ +L H r+H Sme2.5_04976.1_g00002.1 159 HECLLCNRMFKSGQDLGGHKRSH 181 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.6E-8	159	181	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.307	159	181	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	161	181	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MKSCQLEKPI NEKKKPATVP TNQRTRANNG GPMPPAKAGV ESSDNNFAFL ETKSSSVDMK 60 VARKNCLKPT NNLDETHQMC KQKVDKNLKV NALIAEAQSE NSDSGKVYET NENGCNADNS 120 PSYIYKRKHR ETFSNRKPVA HDVNYNPEKK MKPKKLKGHE CLLCNRMFKS GQDLGGHKRS 180 HFLVGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	7e-49	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572635.1	2e-33	PREDICTED: uncharacterized protein LOC107870580
TrEMBL	A0A2G3CFI9	4e-33	A0A2G3CFI9_CAPCH; Uncharacterized protein
STRING	Solyc04g005440.1.1	2e-28	(Solanum lycopersicum)
STRING	PGSC0003DMT400007316	2e-28	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1343	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	6e-09	C2H2-like zinc finger protein