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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_04961.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
SBP |
Protein Properties |
Length: 264aa MW: 29691.7 Da PI: 9.101 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_04961.1_g00003.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 68.2 | 1.6e-21 | 149 | 211 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCs r+rLa+hn+rrrk+q+
Sme2.5_04961.1_g00003.1 149 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCS---------------RKRLADHNRRRRKNQQ 211
6*********************************************9...............5899999999999986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MLSGGDEENQ QNDQNRQFFD PYVANTQTFT ENPYPHQHFP TIQQQNHQFF HTQNNPTTLY 60 DPRGYETCYT PHTQTSILQP NSGFMVVPKS EPHQFVGGGG GGIDFATSSR IGLNLGGRTY 120 FSSSEDDFVN RLYRRTRAVE TGSVMNTPRC QAEGCNADLT HAKHYHRRHK VCEFHSKAST 180 VIAAGLTQRF CQQCSRKRLA DHNRRRRKNQ QANLENSSKS LGSSRNSPSD SLARSPPDSG 240 AHCSSVTVAI SPPRISLDCF RQRP
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Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JF439376 | 0.0 | JF439376.1 Solanum chacoense squamosa promoter binding protein-like protein mRNA, complete cds. |