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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04886.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 799aa MW: 89198.1 Da PI: 6.5081 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 5e-12 | 127 | 208 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ + l+++ l r++++r++lt+GW+ Fv+a++L +gD+v+F + Sme2.5_04886.1_g00002.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPP------LVITG--------SL-SRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 195 89999999999999999999999998644......45444........33.3899999*************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Sme2.5_04886.1_g00002.1 196 NEKNQLLLGIRRA 208 899999****997 PP | |||||||
2 | Auxin_resp | 115.9 | 3.5e-38 | 233 | 316 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k Sme2.5_04886.1_g00002.1 233 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSIK 316 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-32 | 111 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-23 | 121 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.55E-13 | 126 | 207 | No hit | No description |
Pfam | PF02362 | 4.8E-10 | 127 | 208 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-10 | 127 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.6 | 169 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-33 | 233 | 316 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.75E-7 | 668 | 746 | No hit | No description |
Pfam | PF02309 | 1.5E-7 | 669 | 758 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.228 | 672 | 756 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MKLSTSGMDQ QAHEEESKCL NSELWHACAG PLVCLPTIGS RVVYFPQGHS EQVAATTNKE 60 VDAHMPNYPN LPPQLICQLQ NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS 120 RQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLVITG SLSRGQPKRH LLTTGWSVFV 180 SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN 240 SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG 300 DLDPVRWANS HWRSIKYLQF QNTPPKIFHK NDGVLASKPM VLLLAKIVDF VAKLGIDLSD 360 GRDPPIPFFS MCCPFHCVAT LTGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWYPGTS 420 SFQENNTEAI NAMSLLRGES GEQGPHLMNL QSFGGMLPWM QQRVDPTVLQ NDLNQQYQAM 480 LASGLQNFGS RDLMKQQLMQ FQQPVQYVQH ASSHNPLMQQ QQHQQEAMQQ AIHQHMLPAQ 540 TQDNLQRQQL QHSVMMEQQP MQKSWMPKFG HSQLNTGSNS SSLSGYGKDT SNSQETCNLD 600 AQNQTLFGAN VDSSGLLLPT TVSNVATTSI DADMSSMPLG TSGFQDSLYG YVQDSSDLLH 660 NVGQVDPQTG TRTFVKVYKS GSVGRSLDIT RFNSYHELRQ ELGQMFGIEG FLEAPQRSGW 720 QLVFVDREND VLLLGDDPWE AFVNNVWCIK ILSPEDVQKL GKEEVESLNH GALERINSNN 780 SADGRDFMSG LPSIGSLEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-129 | 20 | 316 | 51 | 367 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM560979 | 0.0 | HM560979.1 Solanum lycopersicum auxin response factor 8-1 (ARF8-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172123.1 | 0.0 | PREDICTED: auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2G9H4W8 | 0.0 | A0A2G9H4W8_9LAMI; Auxin response factor | ||||
STRING | GLYMA11G31940.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |