PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04835.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 146aa MW: 16604.1 Da PI: 6.8 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.6 | 1.9e-09 | 4 | 26 | 19 | 41 |
HHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 19 gilKKAeELSvLCdaevaviifs 41 + KKA+ELS+LC++++a++ifs Sme2.5_04835.1_g00004.1 4 SLSKKANELSILCGVKIAILIFS 26 678*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.288 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-9 | 3 | 32 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-11 | 3 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLKSLSKKAN ELSILCGVKI AILIFSIGSQ PFLFGNPHVE SVVHDFLEAN QPTVPSYYMG 60 RKKKIEENED KGKSVKGNFK YRLSEDFKLT NAERLEKLNQ EIKKLEDQLN EEIGFLQNVF 120 GFEDPKPMLE MNVASSSTIP AHWLSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160190.1 | 7e-68 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | M1DEI3 | 2e-66 | M1DEI3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087767 | 3e-67 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-10 | AGAMOUS-like 29 |