![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_04806.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 177aa MW: 20517 Da PI: 8.0216 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.8e-19 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++++q++ Le F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k Sme2.5_04806.1_g00005.1 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAHELGLPPRQVAIWYQNKRARWK 69 67789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.8 | 4.4e-36 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+ e+ne+L+ eve+L Sme2.5_04806.1_g00005.1 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAHELGLPPRQVAIWYQNKRARWKSQSLEVDYKSLQQRLDSALEDNEKLKLEVERL 101 69************************************************************************************ PP HD-ZIP_I/II 88 reelke 93 r+el++ Sme2.5_04806.1_g00005.1 102 RKELNK 107 **9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-17 | 8 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.661 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-16 | 14 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-16 | 16 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.21E-14 | 16 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 18 | 78 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MDFLNSQTRK NHLKCHKKRL NQDQVRLLEI SFSSNNKLDS DRKSQLAHEL GLPPRQVAIW 60 YQNKRARWKS QSLEVDYKSL QQRLDSALED NEKLKLEVER LRKELNKTQE MLLGFNTTTN 120 YSSISSSCDE VGSTLCLQLH DQSKHNHLDK ELYACLIGDE GHFGTHDGHN FFASSLS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 8 | 18 | RKNHLKCHKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364310.1 | 1e-117 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A2G2XF04 | 1e-116 | A0A2G2XF04_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G3D5C9 | 1e-116 | A0A2G3D5C9_CAPCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400081296 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 7e-25 | homeobox protein 52 |