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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_04806.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
NAC |
Protein Properties |
Length: 294aa MW: 33400.8 Da PI: 8.6741 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_04806.1_g00001.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 107.2 | 2e-33 | 59 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
lp+G++F+P+d e++ e+L++kv +++++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r++
Sme2.5_04806.1_g00001.1 59 LPAGVKFDPSDGEIL-EHLEAKVLSDTHKIHPliddfilTIDGQnGICYTHPQRLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKV 142
799***********9.99*****99995553344444433665546**********.566677888******************74 PP
NAM 79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ + +W++tgk+++v+ ++ l+g kk+Lv+y gr++k+ekt+Wvmh+y+l
Sme2.5_04806.1_g00001.1 143 HteidggETRWHKTGKTRPVYI-NEVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 199
4446655778************.999***********66589**************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MTWCSESTGL PIITSSSSPD QENNVVMITS KTRFITCPSC GHSIQLQHQR GILDDLPGLP 60 AGVKFDPSDG EILEHLEAKV LSDTHKIHPL IDDFILTIDG QNGICYTHPQ RLPGVSKDGQ 120 VRHFFHRPSK AYTTGTRKRR KVHTEIDGGE TRWHKTGKTR PVYINEVLKG YKKILVLYTN 180 YGRQRKPEKT NWVMHQYHLG ENEEEKDGEL VVSKVFYQTQ PRQCGSLSIK KPIDNNINPV 240 VKTTTNFVDY YNPNPFITYN VESQSSPHQQ LIQNLVVHGD TSSFIIPSHP SKDK
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |