PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04747.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 1076aa MW: 119909 Da PI: 8.2979

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04747.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	342	363	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rHir+H Sme2.5_04747.1_g00001.1 342 KCEKCSREFCSPINYRRHIRLH 363 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.265	341	363	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	343	363	IPR007087	Zinc finger, C2H2
CDD	cd09272	1.67E-17	1026	1075	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
MDVIVNKSRL EIMPVDTTRT VSNGTIFEKD LKNSQGASDK LSIPVSDPGH CIFISSYRSK 60 ALHLHFQLLI QGIAILFPVA DPGHCIADKA ILFLVVDPGH YIFVSGCRSR AIASRAPSYF 120 QLHPKRHIDS LFITPKRRIH VKYGAIMPNF WVVTFTNTEK EGEKTFANAW PTPTKEGKGD 180 RDIKLGKWAH SENHRDFGYC RRFRVEEASY EKGTPTKNGG RSCSMDAVAS FYGSVRYPLE 240 NPIQARYLPT KKLSCHLLIL CCNSLLALMP VATLNIGGTP NAMKADELNN SLDTFIRQAM 300 RKEPLQRMGE GPAQWMQWLH SMDQSDISGW SISNPSNLQM QKCEKCSREF CSPINYRRHI 360 RLHRRSLNSD KESRKYRDLL GAFWDKLSVD EVKEVVSLQD ISLKEIAGSS LVHALATALG 420 KPALSSLPHV YIKAGSKLLE VIQARPSRLP VTSEELFSIL DDASERTFLC AGTAESVEKY 480 VFDGEADKIG FDSRNLVACT SFLFEQKLVK AWVADKNAEA LRCQKLLFEE EEAAKKKQAE 540 LLERKKVKKL RQKEQKAREQ SNEEKGNLEV PADCFQVPLA EVHSVPGPSD SNSDIPDVSL 600 DVSTCLKLVQ FPSNEDMNIE SKCDFSHQHL DSVRVQNVEP EPVTANVQRL SANAECKVGL 660 LERKKVKKLS TEGTESKGAI KRGKRKSGDI PDVSLNVSTC LKLVQFSCNE DMSIESQCDF 720 SLQHLDSVKV QNVESQPVST DSRWLSANAE WQAPKSQRTV PLLIVVRYGQ EKLRVESDDA 780 SILELRKEAV DQKQRNSEVM IGSLSIPVKD CSTDQQGNCR VEARDEFGST EPAMPKKCNI 840 VGKPAKHNAF QIGSDRAAAK LWRPVRHEVG RQDPEEGVMS LQFDDPTSLN ENPLQSCPMD 900 SSGSSKSCQL PDGSAHQDWG FLVSTAKAFL AQNSETTPAS DSGVHCAVPR AADDQLAKDG 960 VVNSSSSRKN KVKFRPKAEK DIKTKYIPKQ KTHHLGSKGI QVREALTVHG DPFVNLPHVE 1020 TGLCQGCPDT RRSMTGYAVK FGDSLVSWKF KKQQIISRSS VEDEYRSMAC AIVEVT

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

MDVIVNKSRL EIMPVDTTRT VSNGTIFEKD LKNSQGASDK LSIPVSDPGH CIFISSYRSK  60
ALHLHFQLLI QGIAILFPVA DPGHCIADKA ILFLVVDPGH YIFVSGCRSR AIASRAPSYF  120
QLHPKRHIDS LFITPKRRIH VKYGAIMPNF WVVTFTNTEK EGEKTFANAW PTPTKEGKGD  180
RDIKLGKWAH SENHRDFGYC RRFRVEEASY EKGTPTKNGG RSCSMDAVAS FYGSVRYPLE  240
NPIQARYLPT KKLSCHLLIL CCNSLLALMP VATLNIGGTP NAMKADELNN SLDTFIRQAM  300
RKEPLQRMGE GPAQWMQWLH SMDQSDISGW SISNPSNLQM QKCEKCSREF CSPINYRRHI  360
RLHRRSLNSD KESRKYRDLL GAFWDKLSVD EVKEVVSLQD ISLKEIAGSS LVHALATALG  420
KPALSSLPHV YIKAGSKLLE VIQARPSRLP VTSEELFSIL DDASERTFLC AGTAESVEKY  480
VFDGEADKIG FDSRNLVACT SFLFEQKLVK AWVADKNAEA LRCQKLLFEE EEAAKKKQAE  540
LLERKKVKKL RQKEQKAREQ SNEEKGNLEV PADCFQVPLA EVHSVPGPSD SNSDIPDVSL  600
DVSTCLKLVQ FPSNEDMNIE SKCDFSHQHL DSVRVQNVEP EPVTANVQRL SANAECKVGL  660
LERKKVKKLS TEGTESKGAI KRGKRKSGDI PDVSLNVSTC LKLVQFSCNE DMSIESQCDF  720
SLQHLDSVKV QNVESQPVST DSRWLSANAE WQAPKSQRTV PLLIVVRYGQ EKLRVESDDA  780
SILELRKEAV DQKQRNSEVM IGSLSIPVKD CSTDQQGNCR VEARDEFGST EPAMPKKCNI  840
VGKPAKHNAF QIGSDRAAAK LWRPVRHEVG RQDPEEGVMS LQFDDPTSLN ENPLQSCPMD  900
SSGSSKSCQL PDGSAHQDWG FLVSTAKAFL AQNSETTPAS DSGVHCAVPR AADDQLAKDG  960
VVNSSSSRKN KVKFRPKAEK DIKTKYIPKQ KTHHLGSKGI QVREALTVHG DPFVNLPHVE  1020
TGLCQGCPDT RRSMTGYAVK FGDSLVSWKF KKQQIISRSS VEDEYRSMAC AIVEVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	661	668	ERKKVKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-142	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363322.1	0.0	PREDICTED: uncharacterized protein LOC102598349 isoform X1
TrEMBL	A0A3Q7HLU1	0.0	A0A3Q7HLU1_SOLLC; Uncharacterized protein
STRING	XP_009758251.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-78	C2H2-like zinc finger protein