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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_04736.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
Trihelix |
| Protein Properties |
Length: 524aa MW: 60311.9 Da PI: 7.1151 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_04736.1_g00006.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 93.6 | 2e-29 | 103 | 188 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ql
Sme2.5_04736.1_g00006.1 103 RWPRQETLTLLEIRSGLDSKFKEANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 186
8*************************************999*****************************98..55667******* PP
trihelix 86 ea 87
ea
Sme2.5_04736.1_g00006.1 187 EA 188
85 PP
|
| 2 | trihelix | 54.3 | 3.6e-17 | 374 | 462 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrr....gk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
+W+++e+ Li++r++me r+++ ++ + lWee+s km+ g+ +s+++Ck+kw+++n + k+++ +k+
Sme2.5_04736.1_g00006.1 374 KWPDSEITRLIQLRTSMEPRFQQligiSSsrddhdhdddhdDDHVLWEEISTKMAILGYDKSATMCKKKWSSINSYLIKCNKKRKD 459
7*********************744331145667777777799***************************************9998 PP
trihelix 71 rts 73
++s
Sme2.5_04736.1_g00006.1 460 QNS 462
633 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046621 | Biological Process | negative regulation of organ growth |
| GO:0048442 | Biological Process | sepal development |
| GO:0048498 | Biological Process | establishment of petal orientation |
| GO:0090428 | Biological Process | perianth development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 524 aa
Download sequence Send
to blast |
MNGGRPIFGS IQQVPPEFLP VTSNQQHQRR NLGSDHHQYD MVMDLTQVPP SGLPTPHHHQ 60
HHHQHQQHEF LTDSSPVAAT TSAGFSGMDQ MEACGGGGDG SARWPRQETL TLLEIRSGLD 120
SKFKEANQKG PLWDEVSRIM SEEHGYQRTG KKCREKFENL YKYYKKTKEG KAGRQDGKHY 180
RFFRQLEALY GETSNNTISS ASASEAHHQG SHFPYNSVNN INQDPHNFHQ HQGPKLSDSM 240
SLSNSCEFKM TSSEDSDEDK MSRKRRGKRS LKAKIKDFID GQMRKLMEKQ EAWLEKMMKM 300
IEHKEQERIL REEEWRNQET IRMEREHKFW ANERAWIEAR DAALLEAVHK LSGKDLKSTS 360
SNNPRNLDEE MVEKWPDSEI TRLIQLRTSM EPRFQQLIGI SSSRDDHDHD DDHDDDHVLW 420
EEISTKMAIL GYDKSATMCK KKWSSINSYL IKCNKKRKDQ NSTSLLCYNS NLQINNQYYE 480
ADGSSCFRYL MGDHQQQNLW DNYELKLSKG GGGGGGGGDG GSNN
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 439 | 457 | KKKWSSINSYLIKCNKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
