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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04712.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 27493.9 Da PI: 8.0885 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.5 | 1.4e-32 | 53 | 107 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k +YkeClkNhA+ +GghavDGCgEf+p+ ge+g++++lkCaAC+CHRnFHR+ ++ Sme2.5_04712.1_g00002.1 53 KPKYKECLKNHAVGIGGHAVDGCGEFLPA-GEDGSIDSLKCAACNCHRNFHRKVTQ 107 679*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 2.2E-30 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.9E-29 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-21 | 55 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.506 | 56 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-29 | 170 | 245 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.84E-18 | 172 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-23 | 183 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEFEDQEKQR DEEIPAPPSH HNSDSAQPTA KMPPSPRLDL EPLTAVQLWT NNKPKYKECL 60 KNHAVGIGGH AVDGCGEFLP AGEDGSIDSL KCAACNCHRN FHRKVTQTPL AAGGGGGEPV 120 PFVYQSHNQL PAYYRTLPPP CGYLQYHVAP HHRPLALPST SGAGGYREDQ EDISNPNYSG 180 GSKKRFRTKF SQVQKEKMQD LADKIGWRIQ REDETLVQQM CNETGITRQV FKVWMHNNKH 240 TLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-21 | 183 | 241 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-142 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072308.1 | 1e-157 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 2e-68 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | M1C669 | 1e-155 | M1C669_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060623 | 1e-156 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-67 | homeobox protein 22 |