PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04709.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 699aa    MW: 79398.2 Da    PI: 8.4817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04709.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-21395483186
                 trihelix   1 rWtkqevlaLiearremeerlrrg..klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                              rW++++v++Li+a ++++e+   +    kk++W+++s +m+erg+++sp+qC++k ++lnk+y+++++  +++ +++++++  +++
  Sme2.5_04709.1_g00010.1 395 RWSDDMVKLLITALSYIGEDALCNgvLVKKGKWRAISFVMAERGYRVSPQQCEDKYNDLNKKYRRLNDVIGRGtACNVVQNPMLLE 480
                              8***************999887541269*********************************************5599999999999 PP

                 trihelix  84 qle 86 
                              +++
  Sme2.5_04709.1_g00010.1 481 RMD 483
                              996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530677.45E-12545No hitNo description
Gene3DG3DSA:3.30.420.401.2E-11542No hitNo description
SMARTSM002682.4E-757259IPR004000Actin family
PfamPF000223.1E-6542236IPR004000Actin family
SuperFamilySSF530671.11E-7742236No hitNo description
Gene3DG3DSA:3.30.420.404.1E-464364No hitNo description
Gene3DG3DSA:3.90.640.104.1E-4065148No hitNo description
Gene3DG3DSA:3.30.420.404.1E-46154229No hitNo description
PROSITE profilePS500906.168388454IPR017877Myb-like domain
PfamPF138371.4E-19393508No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTVPIYEGY ALPHAILRLD  60
LAGRDLTDCL MKILTERGYS FTTSAEREIV RDMKEKLAYV ALDYEQELET AKSSSAVEKT  120
YELPDGQVIT IGAERFRCPE VLFQPSLVGM ETAGIHETTY NSIMKCDVDI RKDLYGNIVL  180
SGGTTMFPGI ADRMSKEITA LAPSSMKIKV VAPPERKYSV WIGGSILASL STFQQVGYVV  240
VADSSDTVDI SWDIRWKRRR TVFHMTYLEP RFFWKQPPCL HKVKVRSGHT LPSPKPTSGI  300
TLGLSGQLGL FRSMQVNHHL AGYPNQGPVV LMQHAPQVMS FSVSNMEDTP QEMQLLDPVR  360
FNRIEMPEAY HAGLNDVREV SGHPEEKRPV YQRMRWSDDM VKLLITALSY IGEDALCNGV  420
LVKKGKWRAI SFVMAERGYR VSPQQCEDKY NDLNKKYRRL NDVIGRGTAC NVVQNPMLLE  480
RMDLSYDLKD EMSKILGSRQ LFYEEMCSYS NRNRLFLPHD PEVQQSVFRA VRGKYKYESG  540
STSRDLPLKR KMGGEERVCN IPSASLDLNV VQDMPAKRKV GGKESNLYMA RSSLNGTTTL  600
DAYPKVFYPK SNGIHFSMNN KEKQKQDEHI LPRLQQLEKQ KLQIGAQILK LEKQWFNFTS  660
WCSKEDRELQ KMRMDNDVIK LENQQLMLEL NSGGKQCFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nlv_A1e-12132361355Actin
1nm1_A1e-12132361355Actin
1nmd_A1e-12132361355Actin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351819.10.0PREDICTED: uncharacterized protein LOC102593487
RefseqXP_006351820.10.0PREDICTED: uncharacterized protein LOC102593487
RefseqXP_006351821.10.0PREDICTED: uncharacterized protein LOC102593487
RefseqXP_015166145.10.0PREDICTED: uncharacterized protein LOC102593487
TrEMBLM1CWV80.0M1CWV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000765040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-66